Detail information of Os09g0509400_circ_g.2


General Information
CircRNA Name Os09g0509400_circ_g.2
ID in PlantcircBase osa_circ_039768
Alias Os_ciR11879
Organism Oryza sativa
Position chr9: 19771559-19771753  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os09g0509400
Parent gene annotation Conserved hypothetical protein. (Os09t0509400-01);Hypothetical c
onserved gene. (Os09t0509400-02)
Parent gene strand +
Alternative splicing Os09g0509400_circ_g.1 Os09g0509400_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os09t0509450-00:1
Os09t0509400-02:1
Os09t0509450-00:1
Os09t0509400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGAGTCATTTCCTTGTTCAGATCACCTGGAAGCTCTTGAAAGTGTTGCTGTTCCACTTGCAA
AATTGGCACATCCTCCTCTGCTTAATCTGTCTCctacatggccagcttcgagatactccaactg
gagtacagagcagggtgtcgataaatttagtggtagtacattcactgatggtcctttgcttgag
agc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACATGGCCAGCTTCGAGATACTCCAACTGGAGTACAGAGCAGGGTGTCGATAAATTTAGTGG
TAGTACATTCACTGATGGTCCTTTGCTTGAGAGCAGGGAGTCATTTCCTTGTTCAGATCACCTG
GAAGCTCTTGAAAGTGTTGCTGTTCCACTTGCAAAATTGGCACATCCTCCTCTGCTTAATCTGT
CTC
Conservation Information
Conserved circRNAs NA
PMCS 0.356980698
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015