Detail information of Os09g0509400_circ_g.3


General Information
CircRNA Name Os09g0509400_circ_g.3
ID in PlantcircBase osa_circ_039769
Alias NA
Organism Oryza sativa
Position chr9: 19772451-19772620  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os09g0509400
Parent gene annotation Conserved hypothetical protein. (Os09t0509400-01);Hypothetical c
onserved gene. (Os09t0509400-02)
Parent gene strand +
Alternative splicing Os09g0509400_circ_g.1 Os09g0509400_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCATATGCATGTGGGCGACATGCATATGCATGTACCAATTATGCACCACAAGTCTAGTTATT
TATCATGGGATATTTACTCTCgtaccatattcttgactttgagatttgcattaattcactgtat
tttgctcgattgttcatgatgcattggtgtgtatatatgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACCATATTCTTGACTTTGAGATTTGCATTAATTCACTGTATTTTGCTCGATTGTTCATGATG
CATTGGTGTGTATATATGTTAGTGCATATGCATGTGGGCGACATGCATATGCATGTACCAATTA
TGCACCACAAGTCTAGTTATTTATCATGGGATATTTACTCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.135294118
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017