Detail information of Os09g0509400_circ_g.1


General Information
CircRNA Name Os09g0509400_circ_g.1
ID in PlantcircBase osa_circ_039767
Alias NA
Organism Oryza sativa
Position chr9: 19770575-19772924  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os09g0509400
Parent gene annotation Conserved hypothetical protein. (Os09t0509400-01);Hypothetical c
onserved gene. (Os09t0509400-02)
Parent gene strand +
Alternative splicing Os09g0509400_circ_g.2 Os09g0509400_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0509450-00:3
Os09t0509450-00:3
Os09t0509400-02:3
Os09t0509400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACTCTTGACTTTGACAGGTTGTCAGTAACCCAGAGAAGACACCGCTACATACCTTCTTCTGC
AACTATGATTTGAGTGACATGCCTGCTGGAACCAAGgactctgatctgatctattggaatggtt
catcccaggttccttgttgcttgttcaggctccaaattgtgcttcatctccaattgttgcagta
actattgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1859
Transcript exons: 19770575-19772100,19772199-19772450,19772844-19772924
GACTCTGATCTGATCTATTGGAATGGTTCATCCCAGGTTCCTTGTTGCTTGTTCAGGCTCCAAA
TTGTGCTTCATCTCCAATTGTTGCAGTAACTATTGGAACATGATTGGTGGTGGGATGGTGAAAT
CATTAGTGCTGATGGGGTTCGATTCAGAAGCCACATTGTAGTTTTAGCCTTCTTGTGTCATCAT
AGTTTAGCTGATTATTACTGGAACAATTGCTAGAGACTTTGTTGCTGAAAATAAGAGGCTGAAA
TGGATCATGGTAAAATCTGAATAGGAACAAAGTGTGGGCAAGAGGAAAATTGGTTTCCTTTTGC
TGGAGTAACTCTAGTGAGATGGGTTTGCCTCAGGTTCCTGCAATCAAGGAGGAAGTGCTTCCTA
CAATGAGTGCATCTCTTATTGTTCGTCCTCATTTTGCGGGGAATAGCACCTGTCATTTGGGTAA
GCTTCCTGCAGAAAGCTCAAGTAACAGGGCATCTCCATGCTCATACATCAGTGATTTCAAGAGA
AATGATGTTTTAGATTCTTTGAATGGATTTGATGGCAATTTTAGAGCCAGCCATGCTGCTTATG
GGCCTGCAGGCTTCCAAGGTCTAAAACCTGATACAGGGGATGTAGGTTCCAGATCAGGCCCTAA
ATTGGGATCAAATGTTCAGATGCCTGCAATGAGGATTGTTGGCTTTGAATCAGGTTTTGCTAAT
TCCACTGGAGGTCCTGATACGATGGTAGCTGACAATACGGATTCACCTTTAGTTATTGATAATT
GCCATTCATTGATTGAACAGCATGGGCCTCATGCGAGGAAAAGGGTGTTGTCGCCTTTGAACAA
TGCGCTCCCTGGACATTTCCGAGGTGATGCCCTGAATATTGGTTCTGGTGATGCCAAAATTCAG
CATTCTGATTGTGCTAGGAGACTTTATACTTCTGGCTTTCAAGATCGTAAAAAGGCAAATACTG
CAATTCTTGATTCTTTTGAGGCACCTACATGGCCAGCTTCGAGATACTCCAACTGGAGTACAGA
GCAGGGTGTCGATAAATTTAGTGGTAGTACATTCACTGATGGTCCTTTGCTTGAGAGCAGGGAG
TCATTTCCTTGTTCAGATCACCTGGAAGCTCTTGAAAGTGTTGCTGTTCCACTTGCAAAATTGG
CACATCCTCCTCTGCTTAATCTGTCTCCTCTTGGCCCAACATGGATGCATGGAACAAATACTGT
AGGATCTCATGGAGAATCATTGAGAGAAACTGAAGGTTCAACCTGTGAAGGGTATTCAGAAGGT
CATGGTAGGTCAAGGATAAGAGATGCGTTTGAAAAAACTAATATCTTACATGATGACTTTGATA
TGAGGATCCCTAAGAAGAGTTCAGATAGAAAATCTCAAAACTGGGGCCCGGAATCTGCCTCTGT
ATCCCCACGCATTGGATGTATTCGGAGTATTGGTCTCCTTCCTGTACGAAGGTCGTTAATTGGC
TCTTTTGAGGAATCTCTTTTATCTGGTCGCTATTCCTGTGGAAAAGACAATCAGAATATTGACG
GTTTCCTTGCTGTCCTGAATGTGACTGGTGGTAACTTCTCTCCCCCAACTCAGAAGCTTCCATT
TTCAGCTACCAGCATTGATGAGAACAGCTCCTTACTCTACTATTCATCGATCGATCTTGTGGGG
AGGCTGCCTATGAGCAGTAGCAAAAGCCCAAAGCTCAAAAGAAGCCTGAGTAATCATGATTCAC
GATCAGCGAAGAGTCGGTTACGTATCCCAGTTAAAGGGCGTGTGCAGCTGGTTGTCAGTAACCC
AGAGAAGACACCGCTACATACCTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACC
AAG

Genomic sequence GACTCTGATCTGATCTATTGGAATGGTTCATCCCAGGTTCCTTGTTGCTTGTTCAGGCTCCAAA
TTGTGCTTCATCTCCAATTGTTGCAGTAACTATTGGAACATGATTGGTGGTGGGATGGTGAAAT
CATTAGTGCTGATGGGGTTCGATTCAGAAGCCACATTGTAGTTTTAGCCTTCTTGTGTCATCAT
AGTTTAGCTGATTATTACTGGAACAATTGCTAGAGACTTTGTTGCTGAAAATAAGAGGCTGAAA
TGGATCATGGTAAAATCTGAATAGGAACAAAGTGTGGGCAAGAGGAAAATTGGTTTCCTTTTGC
TGGAGTAACTCTAGTGAGATGGGTTTGCCTCAGGTTCCTGCAATCAAGGAGGAAGTGCTTCCTA
CAATGAGTGCATCTCTTATTGTTCGTCCTCATTTTGCGGGGAATAGCACCTGTCATTTGGGTAA
GCTTCCTGCAGAAAGCTCAAGTAACAGGGCATCTCCATGCTCATACATCAGTGATTTCAAGAGA
AATGATGTTTTAGATTCTTTGAATGGATTTGATGGCAATTTTAGAGCCAGCCATGCTGCTTATG
GGCCTGCAGGCTTCCAAGGTCTAAAACCTGATACAGGGGATGTAGGTTCCAGATCAGGCCCTAA
ATTGGGATCAAATGTTCAGATGCCTGCAATGAGGATTGTTGGCTTTGAATCAGGTTTTGCTAAT
TCCACTGGAGGTCCTGATACGATGGTAGCTGACAATACGGATTCACCTTTAGTTATTGATAATT
GCCATTCATTGATTGAACAGCATGGGCCTCATGCGAGGAAAAGGGTGTTGTCGCCTTTGAACAA
TGCGCTCCCTGGACATTTCCGAGGTGATGCCCTGAATATTGGTTCTGGTGATGCCAAAATTCAG
CATTCTGATTGTGCTAGGAGACTTTATACTTCTGGCTTTCAAGATCGTAAAAAGGCAAATACTG
CAATTCTTGATTCTTTTGAGGCACCTACATGGCCAGCTTCGAGATACTCCAACTGGAGTACAGA
GCAGGGTGTCGATAAATTTAGTGGTAGTACATTCACTGATGGTCCTTTGCTTGAGAGCAGGGAG
TCATTTCCTTGTTCAGATCACCTGGAAGCTCTTGAAAGTGTTGCTGTTCCACTTGCAAAATTGG
CACATCCTCCTCTGCTTAATCTGTCTCCTCTTGGCCCAACATGGATGCATGGAACAAATACTGT
AGGATCTCATGGAGAATCATTGAGAGAAACTGAAGGTTCAACCTGTGAAGGGTATTCAGAAGGT
CATGGTAGGTCAAGGATAAGAGATGCGTTTGAAAAAACTAATATCTTACATGATGACTTTGATA
TGAGGATCCCTAAGAAGAGTTCAGATAGAAAATCTCAAAACTGGGGCCCGGAATCTGCCTCTGT
ATCCCCACGCATTGGATGTATTCGGAGTATTGGTCTCCTTCCTGTACGAAGGTCGTTAATTGGC
TCTTTTGAGGAATCTCTTTTATCTGGTCGCTATTCCTGTGGAAAAGACAATCAGGTCCGTAGAA
TTTATACGCTCCTAATTTAGCTTTTAGTGGTGTACCATAAGTTGATATTTTTCGAGTGATGCCA
GTTGATATTTCTCCTAAAGTGCAGAATATTGACGGTTTCCTTGCTGTCCTGAATGTGACTGGTG
GTAACTTCTCTCCCCCAACTCAGAAGCTTCCATTTTCAGCTACCAGCATTGATGAGAACAGCTC
CTTACTCTACTATTCATCGATCGATCTTGTGGGGAGGCTGCCTATGAGCAGTAGCAAAAGCCCA
AAGCTCAAAAGAAGCCTGAGTAATCATGATTCACGATCAGCGAAGAGTCGGTTACGTATCCCAG
TTAAAGGGCGTGTGCAGCTGGTACCATATTCTTGACTTTGAGATTTGCATTAATTCACTGTATT
TTGCTCGATTGTTCATGATGCATTGGTGTGTATATATGTTAGTGCATATGCATGTGGGCGACAT
GCATATGCATGTACCAATTATGCACCACAAGTCTAGTTATTTATCATGGGATATTTACTCTCAT
ACCATTATGGGTACTGGGGAAGCTATATTTGTAATGATACTTTTACTACTCTGCATCATGTCTC
ATTTTATGCCCTCCTGTCATGGATAGCTTTCTTTGGACTTAATTGCTTATTCTCAAATGGTTCT
TCCATTATTTAGTCTTTTAAAAGATTTGTTGAATTGTCATATGCTTCGATGATGTGTCTATTTC
ACCAGAAGCATAACTCTTGACTTTGACAGGTTGTCAGTAACCCAGAGAAGACACCGCTACATAC
CTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACCAAG
Conservation Information
Conserved circRNAs osi_circ_009080
PMCS 0.153229567
Functional Information
Coding potential Y
Potential coding position 19770914-19770664(+)
19770607-19772850(-)
Potential amino acid sequence MGLPQVPAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSSNRASPCSYISDFKRNDVLDS
LNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKLGSNVQMPAMRIVGFESGFANSTGGPD
TMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPGHFRGDALNIGSGDAKIQHSDCAR
RLYTSGFQDRKKANTAILDSFEAPTWPASRYSNWSTEQGVDKFSGSTFTDGPLLESRESFPCSD
HLEALESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGESLRETEGSTCEGYSEGHGRSRI
RDAFEKTNILHDDFDMRIPKKSSDRKSQNWGPESASVSPRIGCIRSIGLLPVRRSLIGSFEESL
LSGRYSCGKDNQNIDGFLAVLNVTGGNFSPPTQKLPFSATSIDENSSLLYYSSIDLVGRLPMSS
SKSPKLKRSLSNHDSRSAKSRLRIPVKGRVQLVVSNPEKTPLHTFFCNYDLSDMPAGTKDSDLI
YWNGSSQVPCCLFRLQIVLHLQLLQ*(+)
MNHSNRSDQSPWFQQACHSNHSCRRRYVAVSSLGY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017