Detail information of Os09g0527100_circ_g.2


General Information
CircRNA Name Os09g0527100_circ_g.2
ID in PlantcircBase osa_circ_039923
Alias NA
Organism Oryza sativa
Position chr9: 20619376-20621332  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os09g0527100
Parent gene annotation Similar to RNA-binding protein. (Os09t0527100-01);Hypothetical c
onserved gene. (Os09t0527100-02)
Parent gene strand +
Alternative splicing Os09g0527100_circ_g.3 Os09g0527100_circ_g.4 Os09g0527100_circ_ag.1 Os09g0527100_circ_g.2 Os09g0527100_circ_ag.3 Os09g0527100_circ_ag.4 Os09g0527100_circ_ag.5 Os09g0527100_circ_ag.6 Os09g0527100_circ_ag.7
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0527100-01:7
Os09t0527100-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTTTGTTCTCTTTTGCAGGTGGAAGGTATATAATCTCTTGTGTTTTGTTGATTTTGCAACTC
CTTCTGAAGCTCGTGCTGCTCTGGAGACTCTGCAAGatatgccttctggaacagggaaatggcc
tcttccatgaatgaatgagccccctctatagccatcacttgaatgatcaggtagcatattgatt
ataagttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1013
Transcript exons: 20619376-20619453,20619588-20619694,20619821-20619882,20
619976-20620054,20620489-20620748,20620819-20621165,2062
1253-20621332
ATATGCCTTCTGGAACAGGGAAATGGCCTCTTCCATGAATGAATGAGCCCCCTCTATAGCCATC
ACTTGAATGATCAGATATTCAGTGGGCATGGACAGTGGAATCCATGGCGCTACAAGAACTGAAT
CAAGAACTCTCTATGTGGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTTGCACATATTTT
TCGCCCCTTTTCTGGTTTTCGTGAGGTGAGATTGGTCAACAAGGAGTCTAGGCATGCTGGAAGC
TGTAACCTCTTGTGTTTTGTTGATTTTTCATCTCCTCCTGAAGCTCGTGCTGCTCTGGAGACTC
TGCAAGGCTATAAGTTTGATGAACATGACCATGAGTCTTCCAACCTGCGCACACAATTCTCTCT
CACTCCTCGCAGGAGGTCAATTGGTGGGCCTTGTGTTAGAAACTAAGTTTCTTGGGTGGAGTTG
AATTAATAATGCAGAGCAAAATTTGTGGAGAATCTCTAGGGAGACTTGTATACAATGCTAGACC
AAACTTGACTCTAGGGAAACAGCCTCTTCCACGAAGCAATGAGCCCCCATTATGTCCATCGCTT
GAACAATCAGATGTCCTATGCTGCTGGTGCTAACCAAAGTGCTATTCCACTTGGTGGGATGGCC
ACATATTCAGCGGGCATGGACAGTGGAAACCATGGCGCTACAAGGACCGAATAAAAAACTCTAT
GTGGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTTGCACATATCCTTTTTATGCCTGTAA
ACTAAAATCACATTTTCCTAGCTATAATTAGTCTAGGTATCTTTTGCGATGTAATTCATGTTAC
ACCTCCTAGGTGCTTTTGCCCTTAACCCTGTCTTCTTCAGATATTCTTCGCCCCTTTCTGGTTT
CTTTGAGGTGAGATTGGTCAACAAGGAGTCTAGATATGTGGAAGGTATATAATCTCTTGTGTTT
TGTTGATTTTGCAACTCCTTCTGAAGCTCGTGCTGCTCTGGAGACTCTGCAAG

Transcript length: 1075
Transcript exons: 20619376-20619453,20619526-20619694,20619821-20619882,20
619976-20620054,20620489-20620748,20620819-20621165,2062
1253-20621332
ATATGCCTTCTGGAACAGGGAAATGGCCTCTTCCATGAATGAATGAGCCCCCTCTATAGCCATC
ACTTGAATGATCAGTTGCAGATGTCTTATGTTGCTGGTACTAACCAAAGTGCGATTCCACTTGG
TGGGATGGCCAGATATTCAGTGGGCATGGACAGTGGAATCCATGGCGCTACAAGAACTGAATCA
AGAACTCTCTATGTGGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTTGCACATATTTTTC
GCCCCTTTTCTGGTTTTCGTGAGGTGAGATTGGTCAACAAGGAGTCTAGGCATGCTGGAAGCTG
TAACCTCTTGTGTTTTGTTGATTTTTCATCTCCTCCTGAAGCTCGTGCTGCTCTGGAGACTCTG
CAAGGCTATAAGTTTGATGAACATGACCATGAGTCTTCCAACCTGCGCACACAATTCTCTCTCA
CTCCTCGCAGGAGGTCAATTGGTGGGCCTTGTGTTAGAAACTAAGTTTCTTGGGTGGAGTTGAA
TTAATAATGCAGAGCAAAATTTGTGGAGAATCTCTAGGGAGACTTGTATACAATGCTAGACCAA
ACTTGACTCTAGGGAAACAGCCTCTTCCACGAAGCAATGAGCCCCCATTATGTCCATCGCTTGA
ACAATCAGATGTCCTATGCTGCTGGTGCTAACCAAAGTGCTATTCCACTTGGTGGGATGGCCAC
ATATTCAGCGGGCATGGACAGTGGAAACCATGGCGCTACAAGGACCGAATAAAAAACTCTATGT
GGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTTGCACATATCCTTTTTATGCCTGTAAAC
TAAAATCACATTTTCCTAGCTATAATTAGTCTAGGTATCTTTTGCGATGTAATTCATGTTACAC
CTCCTAGGTGCTTTTGCCCTTAACCCTGTCTTCTTCAGATATTCTTCGCCCCTTTCTGGTTTCT
TTGAGGTGAGATTGGTCAACAAGGAGTCTAGATATGTGGAAGGTATATAATCTCTTGTGTTTTG
TTGATTTTGCAACTCCTTCTGAAGCTCGTGCTGCTCTGGAGACTCTGCAAG

Genomic sequence ATATGCCTTCTGGAACAGGGAAATGGCCTCTTCCATGAATGAATGAGCCCCCTCTATAGCCATC
ACTTGAATGATCAGGTAGCATATTGATTATAAGTTTGTTGATTTGAGGCTAGCAACTTTTTTAC
CAACATAGTAATTATCTTCCAGTTGCAGATGTCTTATGTTGCTGGTACTAACCAAAGTGCGATT
CCACTTGGTGGGATGGCCAGATATTCAGTGGGCATGGACAGTGGAATCCATGGCGCTACAAGAA
CTGAATCAAGAACTCTCTATGTGGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTTGCACG
TATCCTTTTCTATGCTTGTAAACTAAAATCACATTTTCCTAGCTATAATTAGTCTAGGTATCTT
TTGCGACGTAATTCATATTACACCTCCTAGGTGCTTTTGCCCTTAACTCTTTCTTCTGCAGATA
TTTTTCGCCCCTTTTCTGGTTTTCGTGAGGTGAGATTGGTCAACAAGGAGTCTAGGCATGTAAG
TTAAATGCTACCTGTGATCCAAATTTTCCCTGTTATTTTTTGCAAAGCCAAGCATGCTTACATG
TCAAATCCCCTCTCTGTTTTGCAGGCTGGAAGCTGTAACCTCTTGTGTTTTGTTGATTTTTCAT
CTCCTCCTGAAGCTCGTGCTGCTCTGGAGACTCTGCAAGGTAATTATAACATCATATTTTCTGC
ATCCATATGCATTGTACTTATGTTGCCAATTTCGTTAGATAGTGCTTGCGCACAGTTTCATTCT
TTTATGTTTGTGTGCCTTTAGTCTTTTTAAAAATCTGTTTATTTTTCTGAATATTTTTCCCTTT
GTCCCACATCCAGTAGGTTTTAGTGTGATGACTGAACTAAAACTAAGATTGTTATTTCGAAATA
TCATATTTTTTCCTTGTTCCACTTTGAAACCAGCTTACTGTCATTCTATGTGTGCTATATCATA
TGTAATAATATTTGTGTGCACATCAACTTTAGTGCTTTCCATCATAAAACTAGACGTTTCATTG
GTAGGGAGAGAATAAACTTTGAGCTTCTAATACTTGTTCAGGTTATAAGCTTGAATTTGGCTCT
GAAATTATGACGTTTTACTTTGCAGGCTATAAGTTTGATGAACATGACCATGAGTCTTCCAACC
TGCGCACACAATTCTCTCTCACTCCTCGCAGGAGGTCAATTGGTGGGCCTTGTGTTAGAAACTA
AGTTTCTTGGGTGGAGTTGAATTAATAATGCAGAGCAAAATTTGTGGAGAATCTCTAGGGAGAC
TTGTATACAATGCTAGACCAAACTTGACTCTAGGGAAACAGCCTCTTCCACGAAGCAATGAGCC
CCCATTATGTCCATCGCTTGAACAATCAGGTATTATATCAATTATAAGCTTGTTAATTTAAGGA
TAGCAACTTTCTTACTAACATAGTGCTGGTTGCAGATGTCCTATGCTGCTGGTGCTAACCAAAG
TGCTATTCCACTTGGTGGGATGGCCACATATTCAGCGGGCATGGACAGTGGAAACCATGGCGCT
ACAAGGACCGAATAAAAAACTCTATGTGGAAGGACTACCTTCGAACTGCACAAAGAGAGAGGTT
GCACATATCCTTTTTATGCCTGTAAACTAAAATCACATTTTCCTAGCTATAATTAGTCTAGGTA
TCTTTTGCGATGTAATTCATGTTACACCTCCTAGGTGCTTTTGCCCTTAACCCTGTCTTCTTCA
GATATTCTTCGCCCCTTTCTGGTTTCTTTGAGGTGAGATTGGTCAACAAGGAGTCTAGATATGT
AAGTTAAATGCTACTTATGAACCAAAACTTCCCTGTTCATATTTTGTAAAGCCTAGCATTGCTT
ATATTTTGTTCTCTTTTGCAGGTGGAAGGTATATAATCTCTTGTGTTTTGTTGATTTTGCAACT
CCTTCTGAAGCTCGTGCTGCTCTGGAGACTCTGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.19809245
Functional Information
Coding potential Y
Potential coding position 20621165-20619410(+)
20619440-20621035(-)
Potential amino acid sequence MWKVYNLLCFVDFATPSEARAALETLQDMPSGTGKWPLP*(+)
MAIEGAHSFMEEAISLFQKAYLAESPEQHELQKELQNQQNTRDYIPSTYLDSLLTNLTSKKPER
GEEYLKKTGLRAKAPRRCNMNYIAKDT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017