Detail information of Os12g0514500_circ_g.7


General Information
CircRNA Name Os12g0514500_circ_g.7
ID in PlantcircBase osa_circ_011594
Alias NA
Organism Oryza sativa
Position chr12: 19926727-19927095  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0514500
Parent gene annotation Similar to Heat-shock protein precursor. (Os12t0514500-01);Simil
ar to ATP binding. (Os12t0514500-02);Similar to ATP binding. (Os
12t0514500-03)
Parent gene strand -
Alternative splicing Os12g0514500_circ_g.4 Os12g0514500_circ_g.5 Os12g0514500_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0514500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGGGAGGCAGCATTGTCGGTCCCGGTAAGCTTGGGCGCAGCAAGCACAGAGAGCAACCTCTT
CTGAAGCTGAGGGACACCAGGCTCCCCATTAATCACctgacaagctctcgaagaaacacctcct
tgttgctatacaagctgtgaacaatcaagtccatgagcctattgacctgccatgcacattggac
aatatcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGACAAGCTCTCGAAGAAACACCTCCTTGTTGCTATACAAGCTGTGAACAATCAAGTCCATGA
GCCTATTGACCTGCCATGCACATTGGACAATATCATGACACCGTTGGTAACACGAGATTGATTA
AGAAAAATAAAACATTAGCCATTGCTCCAGTAGTTACCTCTGCCTGGTACTCATGCTTCTCCAC
AGGTGGCGTATCAGAAGAATCAACTGCTGCAGCACTCGATTCATATCGCCTGCCAACAAGGGAA
CCCTCCCTCAGCTTGAGGGAGGCAGCATTGTCGGTCCCGGTAAGCTTGGGCGCAGCAAGCACAG
AGAGCAACCTCTTCTGAAGCTGAGGGACACCAGGCTCCCCATTAATCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.306623397
Functional Information
Coding potential Y
Potential coding position 19926908-19926771(+)
19926790-19927094(-)
Potential amino acid sequence MLLHRWRIRRINCCSTRFISPANKGTLPQLEGGSIVGPGKLGRSKHREQPLLKLRDTRLPINHL
TSSRRNTSLLLYKL*(+)
MDLIVHSLYSNKEVFLRELVR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017