Detail information of Os12g0514500_circ_g.5


General Information
CircRNA Name Os12g0514500_circ_g.5
ID in PlantcircBase osa_circ_011592
Alias NA
Organism Oryza sativa
Position chr12: 19925504-19926800  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0514500
Parent gene annotation Similar to Heat-shock protein precursor. (Os12t0514500-01);Simil
ar to ATP binding. (Os12t0514500-02);Similar to ATP binding. (Os
12t0514500-03)
Parent gene strand -
Alternative splicing Os12g0514500_circ_g.4 Os12g0514500_circ_g.6 Os12g0514500_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0514500-01:7
Os12t0514500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTTATGTTCTTGAATGACACCCACCTGACAAGCTCTCGAAGAAACACCTCCTTGTTGCTATA
CAAGCTGTGAACAATCAAGTCCATGAGCCTATTGACctctgttttagtctcatcgtcgccttct
ttagcttcaacaggttcatcgacctcaacctaaaagagcaaaatatgccacaattaaattgatg
cattggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGTTTTAGTCTCATCGTCGCCTTCTTTAGCTTCAACAGGTTCATCGACCTCAACCTAAAAG
AGCAAAATATGCCACAATTAAATTGATGCATTGGTCCAATAAAAAATAATTAACAAAGGAAGAG
CATTCACCTCTTTTGTGTAACCTTTCTCTTGCCAAGTATAAATAGGGAAGGAAACAAACTGTGA
GTAATTCTTCACAAGTTTCTGAATCTTCTCAGGGTGTGCGAAACCCTTGTCCTCACGCTGAAAC
AATACCAAGAATTGTAGTTAGAAACAGGTCATGTATAAAATGAGTTGGATGATATCAAAATAAG
CAAATAGACCTTAAGGTACAGAGTAAGGCGAGTTCCCCTAGGAAGGAGCTTCTCTGGGTCTGTC
TCCTCTCTAATGGTGTAAGAACTAGATTCTGCCTCGCCTTCCCAAACATATTGCTTGTCAGATT
TTGGGCTCTTAGTTGACACTGCAACCTATTAGACAAAATAAATAATATTCATGAAATATTAACA
TGTCAGCCAAGGACAATGGGAAATAAACACTAGGTCATTAACAGCCAGCTATTAACCTTCTAAT
TAAAGACAATCACGATAGCATCTTACCTTATCAGAAACAAGAAACGCAGAATAGAATCCAACAC
CAAATTGACCAATCAAGTTGCTGTCAACACCAGCCTCTTGGCTCTCCTATTATATAATAATACT
TAAGATTAGTAATATGACAGGATAAGAAACAAAGAAAAATAAGGACATGAAGGTAACATCAGCA
AAGTGCAAATGGAACACACCTTTAGTGCCTTAAGGAATTTGGCAGTTCCACTGCTCGCTATAGT
TCCAAGAGAATCAACAAGTTCTTGCCTCGTCATACCAATCCCAGTATCACTAAAGATAAAAAGG
AGCAAATGCAGGCATGAGTTTGCAAGAAAGGAGCCACATAATTGATCAAGTAACTAATACTTAC
GTGATTGTTATTATTCCATTCTCCTTATCTGTTTGGATGCGAATGTCAAGACCAGCACCATCCT
TTATAAGATCAGGATCAGTGACACTAAGATACCGCAACTTATCAAGTGCATCACTTGCATTGCT
GCAAACAGATACACGATGAAGAAATTAAAAAAAATTAAACCATAGAGATCAAACTAAACGCACA
AGAGTAAACCAAGATGATGATTAGTACAAACTTCAATTAGTGAACAACTTATGTTCTTGAATGA
CACCCACCTGACAAGCTCTCGAAGAAACACCTCCTTGTTGCTATACAAGCTGTGAACAATCAAG
TCCATGAGCCTATTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.167153328
Functional Information
Coding potential Y
Potential coding position 19926788-19925648(+)
19926790-19925506(-)
19925552-19926781(-)
Potential amino acid sequence MSLLTSVLVSSSPSLASTGSSTSTSFV*(+)
MDLIVHSLYSNKEVFLRELVSNASDALDKLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITITD
TGIGMTRQELVDSLGTIASSGTAKFLKALKESQEAGVDSNLIGQFGVGFYSAFLVSDKVAVSTK
SPKSDKQYVWEGEAESSSYTIREETDPEKLLPRGTRLTLYLKREDKGFAHPEKIQKLVKNYSQF
VSFPIYTWQEKGYTKEVEVDEPVEAKEGDDETKTEVNRLMDLIVHSLYSNKEVFLRELVSNASD
ALDKLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITITDTGIGMTRQELVDSLGTIASSGTAKF
LKALKESQEAGVDSNLIGQFGVGFYSAFLVSDKVAVSTKSPKSDKQYVWEGEAESSSYTIREET
DPEKLLPRGTRLTLYLKREDKGFAHPEKIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEPVEA
KEGDDETKTEVNRLMDLIVHSLYSNKEVFLRELVSNASDALDKLRYLSVTDPDLIKDGAGLDIR
IQTDKENGIITITDTGIGMTRQELVDSLGTIASSGTAKFLKALKESQEAGVDSNLIGQFGVGFY
SAFLVSDKVAVSTKSPKSDKQYVWEGEAESSSYTIREETDPEKLLPRGTRLTLYLKREDKGFAH
PEKIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEPVEAKEGDDETKTEVNRLMDLIVHSLYSN
KEVFLRELVSNASDALDKLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITITDTGIGMTRQELV
DSLGTIASSGTAKFLKALKESQEAGVDSNLIGQFGVGFYSAFLVSDKVAVSTKSPKSDKQYVWE
GEAESSSYTIREETDPEKLLPRGTRLTLYLKREDKGFAHPEKIQKLVKNYSQFVSFPIYTWQEK
GYTKEVEVDEPVEAKEGDDETKTE(-)
MNLLKLKKATMRLKQRSIGSWT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017