Detail information of BGIOSGA034174_circ_g.6


General Information
CircRNA Name BGIOSGA034174_circ_g.6
ID in PlantcircBase osi_circ_009495
Alias Chr11:9476887_9480075(MH63RS2), Chr11:9395532_9398720(ZS97RS2), Chr11:9476887_9480075(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7695497-7698684  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA034174
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034174_circ_g.3 BGIOSGA034174_circ_g.4 BGIOSGA034174_circ_g.5 BGIOSGA034174_circ_g.7 BGIOSGA034174_circ_g.8 BGIOSGA034174_circ_g.9 BGIOSGA034174_circ_g.10 BGIOSGA034174_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA034174-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTAGTTCACCACACTCTTTATAAATGCTACCAAGTAGATGGTATGAATTTGACAAATTCGG
CGCGATCCGCACAACCTCATGTAATATAGGAATTGCcctttctgaaagtaaggaattgctttcc
ttttctcccctatgaccatgtagcattgaccaactttcacatatgaactaccctgaaacaagtt
atagtata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTGAAAGTAAGGAATTGCTTTCCTTTTCTCCCCTATGACCATGTAGCATTGACCAACTT
TCACATATGAACTACCCTGAAACAAGTTATAGTATATCAAACTAGAGAAGGGTGAAGGAAATAA
AATATACATACAACTTCCTCAATCCCTTAATGGACTAGGTGATTGCGATGGTGTGCTTTACACC
CATCCTTTCATTTCCAAAATATCATTTATTGATGGATTTCTGTAGGCATGTATTTATAGAATCT
TTTATGAAGGACTGCATCCTTTGTACATGTGTAAGCAAGTGACTAGTTGATCCATTGTGAATTA
GAATGTTTTCTGTAGATTTTTAAATACCTTTTTTTTATGAAGCATTAAAGCAGACAAAGCCCAT
TCCCCATTCCTGATCATGGTACCATTATCAAGCCTTTAAAGAGCATGTACATTCTAATCAAATT
TGGAACATTTGTGGCTAGCTAGAAGATCTACATGCTGTTAAAAGCACATTCTCAAATGATTAAT
TGATTTTTTTTATCATATTTATGTTCAAATCAGCTAATAGGAACTGCTTTGCCCCCAACTTCTT
TCAGTAGCAGTTGCCTGGCTTCACCTCTTCTGGGTTACGTAGTTACATAATTTTATTCCACTAT
AACTCACGACTAATGGATAGGTTCAAATTTATTATGTTGAGATGGGCTTCCTTCCCCTTCCAAA
AATTATACTCATTGGAATCAAACCAGATGTTTGTTTCCAATTACCAAGTCTATCATAATTGTAT
TATGCACTTATAGCATTACCTTGATAAGTTATATATGTCAAAAGATTCACAGGATTGAATTGAT
CTTCTGAAGACTTCACAGCATTTAGGAAAAAGTTCGCTTAACACTTTGTGGTTAGTCAATGTGG
ACAATGACGTGGTGGGTGGTGTTGCTTGCATGACACACACACCAAAGCATGTTTCACCCAAGTT
TGCCCAAGCAATCACTTTCTTTAGTCAGCAAGCCCAGAAACCACCTCCAGTGCTATTTGTACTT
CTTCTCCAAGCTATTCTGCTAGTTAAAAAATATTTAACTGAATCCATCACCATGTCACTGTTCT
CGTCATCGTCCACGTGGGGAAAACACTTACAATACAACTCCAGGGGGGAGGGGGGGGTTTCAAA
TAGTTGTTCATGCGTTGGGGAGTAGAATATCAGGTTTTGTACTTCAGGGGGTTAAGTAGAGGTT
TTGGCTTTTTGCCATTATTTATAAATCATATGGTCCTAATTATCATTTGTTCCATGCTTAATTG
AACGCTAGAAACATGTAATAGTGAAACAGAACTTCAAAATGAAGCAAATCGGCTACTTACATCA
TTATGAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCTAAAT
TTTCGAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGATGCAC
ATTCTGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTATACGT
TGAAGTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCTGTTA
TCAGAGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAAAGGT
GGGTTTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGGGACA
AACCTCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAATTGT
ACTGGCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTATCAATCAGCCTCAATGCTTCAT
TATAGGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGTTTGT
AGTTTGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTCCCTG
TACATCTGGACAAAAAAGTCACAAAGCAATAAGTGGAAGTCTAGAACTAACTCAGCAGTCCATA
TTGTTATGTACTGGCTTCAGTGATTAGATAGCAGTTCAGATATATGAGTTCTTAGTTGTGTCAT
GTGCATCCAGGTGTCTAGAGTCAAGTCTTAGCAGTTGGCATCCAGGAGTCCAAGAGTCTATAGA
AGTTAAGAGCCCTCATACTTGCTTGTGCCTTAAGCTAAATAGAGATAAGTGTCCTGTTTGGATG
GTGCTAATTGGTCTTGTTTACATGCATGTCTAGGGACCTATATGTTTGTATTCATTGACTCAAA
TAGAGGCATGAAAGATCATTATATCTGTATCTCCCTCTTGTCCCTGACTACAATGGTTCCCTGC
CGCTGGCTACCAGGAAGAACCTCATTCACCAACGCTACTAGCCCATAAAAGCTAAAATCAATTT
GTAATTTATATGCACCACAAAATAACGCAAGAATTGTTATAAGCAAATAAACCTGTGCTGCTGC
TTTACGAGCAACAATGTTTGAAGGATAAATTCTGACTATCTGCTCGTATATCTCTCCAGCTTTC
TGATAGTCACGCAAAGCGCGATATATATTAGCACAATCAAACTTCAGTCCTACATCTTCAGGAT
CTGCTCTCATCGCTTTTAAAACACAGTGTCTTGCTAAAGCAGCATCTTCCTTTTTCCTGACAAA
TATAATAAAGTAGTCAATATGGTCCGTTATATTATTATTTCTGGCCATTGTATGCCTTACCTCC
AAGAAAAAATTATGCTAGGTAATCAGCAATTAAGGTACTTTGGGTTCATGTATTAACAAGAACT
AGAGGCTTCCTGAAAATTAGTATCATAAAACATAAAAGCAAAATTGAGGTCTGAGGATGAGACC
ATATTACTGAATGCAACATTTGTACTCTGCATAAATCAAGCTAACTACTGTAACAAATTAAAAG
TTTATGAATAGAATTAAAAAAATGAAACATAGAAAAAGGAAAAAGGATTAGCATTAACTCACAA
TGCCATGTCAATGAGTTTCTTCCACAAAAATACATCCTTTGGAGAAACATATGCAGCGAGCATT
AGAAAGTTTATGGCTTTATCTAGTTCACCACACTCTTTATAAATGCTACCAAGTAGATGGTATG
AATTTGACAAATTCGGCGCGATCCGCACAACCTCATGTAATATAGGAATTGC
Conservation Information
Conserved circRNAs osa_circ_009040
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021