Detail information of BGIOSGA026439_circ_g.5


General Information
CircRNA Name BGIOSGA026439_circ_g.5
ID in PlantcircBase osi_circ_017522
Alias Chr07:29745516_29746218(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr7: 27536522-27537224  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA026439
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA026439_circ_g.2 BGIOSGA026439_circ_g.3 BGIOSGA026439_circ_g.4 BGIOSGA026439_circ_g.6 BGIOSGA026439_circ_igg.1 BGIOSGA026439_circ_igg.2 BGIOSGA026439_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA026439-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGGTGTAGTTGGCAAACGTGGAGAAATGCTGTCACTAAATCCAAGTATCACAGTCAAAGAAA
GTGGTGACATTTTATCTCTTGAGGAGAAATTTCAAGgctggctagctatggagttcacaccata
ccaaaggatctgagagcaacagaagagatactaaagtcgtctcctgacgatatctggaatgacc
tgaaagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGGCTAGCTATGGAGTTCACACCATACCAAAGGATCTGAGAGCAACAGAAGAGATACTAAAG
TCGTCTCCTGACGATATCTGGAATGACCTGAAAGCAAAACTACAAACTGAAACCGTTTGTGTGA
AACCTGCTCGTGATGGATGCTCAACTGGTGTGGCAAGATTGTGGTGAGCGTTTAATTGGTGCTT
TCTGTATTAGTACTATATAATATCTGGTCATGTCTTCCACATTCACGGATCATTATGAAAACCA
ACTATTTTTAGTTGTCCGAAGGACTTGGAGGTATATGCAAACGCATTGGAGAGAAAATTACAGC
GCATGCCTGCTAACTGTTTATCTAGGGTACGAAAAACTAAATTTGATAACTTATTAAACCTGTC
TTTATGTCCATTGAGAAATTCGGTGCTGAGATGCATTTTTTGACATTAAGCTTTACTCCTTAGG
CACATGGTGTCATTGAGATGCCAGTCTCTCCTCCAGAGTCACTGATATTTGAACCTTTTATTGA
AACCGATGAAATTATCATTTCAACCAAATCAGTGGATGATAGCACCCGACATCTGGTATGGAAG
GGGGAAAATAAATGGCTTGAAGTGACTGTTGGTGTAGTTGGCAAACGTGGAGAAATGCTGTCAC
TAAATCCAAGTATCACAGTCAAAGAAAGTGGTGACATTTTATCTCTTGAGGAGAAATTTCAAG
Conservation Information
Conserved circRNAs osa_circ_035436
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021