Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d029626_circ_g.2 |
ID in PlantcircBase | zma_circ_006569 |
Alias | zma_circ_0000728 |
Organism | Zea mays |
Position | chr1: 80235888-80239077 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d029626 |
Parent gene annotation |
Xanthine dehydrogenase 1 |
Parent gene strand | - |
Alternative splicing | Zm00001d029626_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d029626_T008:5 Zm00001d029626_T002:5 Zm00001d029626_T009:5 Zm00001d029626_T001:5 Zm00001d029626_T004:3 Zm00001d029626_T006:5 Zm00001d029626_T007:5 Zm00001d029626_T005:5 |
Conservation Information | |
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Conserved circRNAs | osa_circ_020391 osi_circ_004893 |
PMCS | 0.103430056 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
80239064-80235983(+) 80238884-80235890(-) 80236017-80238923(-) |
Potential amino acid sequence |
MLLRSLCKRVVGSFASNGFHSNLDLLTSIQNCSSIQI*(+) MISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRI NGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQ NCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVY TDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGA AVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETR SAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGG HSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIAT ELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKR GIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSS VFISETSTDKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYV ASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRH SFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTN FPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVW DELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVT HGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGAAVLDACQQ IKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAA SVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLA VLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEE IKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTK FGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETST DKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAE(-) MHHQQQPLLVQICMELQFWMLVNKSRFEWNPLLAKEPTTRLQRLRRSIRSMLQVFLVFHNQKSF ARLSVLVVDLVEKKPDQQYLLLQHLYPLSV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |