Detail information of Zm00001d029626_circ_g.2


General Information
CircRNA Name Zm00001d029626_circ_g.2
ID in PlantcircBase zma_circ_006569
Alias zma_circ_0000728
Organism Zea mays
Position chr1: 80235888-80239077  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d029626
Parent gene annotation Xanthine dehydrogenase 1
Parent gene strand -
Alternative splicing Zm00001d029626_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d029626_T008:5
Zm00001d029626_T002:5
Zm00001d029626_T009:5
Zm00001d029626_T001:5
Zm00001d029626_T004:3
Zm00001d029626_T006:5
Zm00001d029626_T007:5
Zm00001d029626_T005:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCACCAAATCCACCACCAATACGCTTAGTCTTGCAAACGACTTTTGATTGTGGAAGACCAAG
AACACTTGCAACATACTTCTGATGCTTCTGCGGAGCctctgcaaacgagttgtgggttcctttg
ctagcaatgggttccattcgaaccttgatttgttgacaagcatccaaaactgcagctccataca
gatctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCAAACGAGTTGTGGGTTCCTTTGCTAGCAATGGGTTCCATTCGAACCTTGATTTGTTGA
CAAGCATCCAAAACTGCAGCTCCATACAGATCTGAACTAGCAGAGGCTGCTGTTGGTGATGCAT
TAGGAACCTAAACAGATGGAATCCCATCACCTCATTGTATTGGCACAACTTATAAATAAAAGTA
ATGAAAAAAAGTACAACTAGTGTAAAAATCATGCAGAAGGGGTACATCCATGTGTCGGACCTCA
CCTTATCAGTACTTGTCTCTGATATAAATACAGAGCTAAGAGGGATATTGAATGACGAGGCAGC
AACTTGGGCTACCTTTGTGTGCAAACCCTGTCCCATCTCGACCCCGCCATGTGTTACCAGGACA
GTGCCATCAGTGTAAACTTGCACAAGAGCGCCAGCCTGCATTATTTCATCGACCGAAACTTATC
TTAGATTGAATAAGGATGATGAAACTAAGAACATAAGTCAATGTCATGTCTAATTTACTGCTTC
TTTGATAATTTTAGATGGAACCTCTATGATCCGAAAATGGGTTCCAAAAAAAATTGGGGATGGC
ACTGGAGTATATTATGGCCCTGTTTGTTTCAGATTATAACCTCTCCAGATTATATAATCCAGTG
CAAATAATTCAGTAGGTAAACAAACACCTAGATTATGAGTACAGATTATATAATCTAAACTCCA
GATTATGATAATCTCATAATCTTCTCAAGAGTAGCTTATTTGAGATTATTTTGGCAAAAGACCC
ACTACCCATGGTTATGTAAATAGAAATTACAATATATGTCATCCTTTTTTTCTCACCTCAAATT
AACAAATAAGGGTATTGTTGTCTTTGTGAATAATGTACATGTGTATAATCTAAACTACCAAACA
ACCATATGTAGATTATAATCTAGATTATATAATTTAGATTATAATCTAGATTATATAATCTATA
ATCTGAAACAAACATGCCCTATGGCAAATAAATAAACACAAACCAAGGTCAGTGTCACTGCACC
AATAGAGTCCAAATATTTCAGTCACACACCCAATATCGTGAAGGGTCACAAAACCACTGAGAGG
ATACACTGATACTGCTGACAATATAGTATAACACTATAAACATCAAATGACATGTTGTGTTATG
GCAGTACATTCAACACAAAAATGATGTATGGGGCTAAGCAGAAACCAAAATAAAATAAGAAACT
GTGTGGGTCTGTGGTCTCAACTAAAATATGTATGGAGCTGTGATCTGTGGTCTCAAATAAAACA
ACAGAAAAACAACCAATTTTATGGCAATTGTAACTAAAATATGTGAGTGTATAATTTACCATAA
GTTAAACAACTGTGTGGGTCTGTGGTCTCAACTATGTTGGACCGGACCGCCAACACATGGCGTG
TCCATCGGGGCCACCCGCACACACGGCGCGCCCATCCAGGCTGTCGGGCCACGACACACGCGCC
CGTACGTATAGCAGCGGGCTTTAGGTCTCTTGGGCCAATACTCCCCCCAAAAAGCTAGCCTATT
AGGGGGTTGCACCCTCAACCATATAAACCTTGCTTTCTCACTCTCACTAGACAATGTGGGACTA
TTCCCAACAATCTCCCCCTCACACATTGTGAGCCGAGATTTGTCTGAGAATGCACTGGACCAAC
CTGGCTTTGATACCAATTGTTGGACCGGACCGCCAACACATGGCGTGTCCATCGGGGCCACCCG
CACACACGGCGCGCCCATCCAGGCTGTCGGGCCACGACACACGCGCCCGTACGTATAGCAGCGG
GCTTTAGGTCTCTTGGGCCAATCTGTGTCGTGGCCCGACAGCCTGGATGGGCGCGCCGTGTGTG
CGGGTGGCCCCGATGGACACGCCATGTGTTGGCGGTCCGGTCCAACAATCCCCCCAAAAAGCTA
GCCTATTAGGGGGTTGCACCCTCAACCATATAAACCTTGCTTTCTCACTCTCACTAGACAATGT
GGGACTATTCCCAACAAACTAATCACACCTTTAAAGAATTTTCATGCATCAAATATCAAAACTA
AAAGGAAATCAGTAATCCCACAAACTCCAATTTGTAATGATAGACTGGCAGAGCTTCATGGTGG
ATCACCTGATTCATGAATTTTGCAGTGAAGGATATGCCAAATTTTGTCGGAATCATGGCAATTC
CTCGCTTCCTCCAGCGGTTATTACTGTTAAAATTATTTATGGCTTTGCGAGCTTCCACAAAATT
ACAAGATGCTTTTAGTTCATCCCAAACTGAACTTATTGTACAATTCTGGAGCAACTGGCCATAA
TGTAGCACAACTCCATCATTGTGAAAATTAAGTTCCTGTCAAGACTCAAATAGGTTAATCTCAC
AATAGTTTGACAAGGCCAGTGCCATTCACAGCGCAAGTTTATGCTTACTTTTATCTCTTCAGGA
CTTCGTTGGAGTTCTGTAGCTATATGGTGAATCCAATTCTCTGCAATCAACAAGCCTTGTGGAC
CACCAAAACCTCGGAAAGCAGTATTACTTGGGAAGTTTGTAAAGCATACTTGCCCATTGATTCT
GATGTTTTCTATGTCATAGACATTTTCTGAATGAAACATAGCACGTTCCAGTACTGCAAGGGAT
AGATCAAGTGAATGGCCACCGTTGTTATAAATTTCCAGGTCTAGGGCCAGTATCTTCCCTTCAT
TGGTAAATCCCACCTAAAACATCAATGGGGAAGTTAGTTAATCTAAATAAGTACAAAAGAGCAG
AAAAAATTTGGTATATGAGTGTCCAGTCGGAACATTGCAGTTATGGGAAGCATTAAATTTTCAG
CAATTAGCGTTCCCAATTTACTGCAACGCTTTCTATAAAAGCAGGGTAACCCTTTTAAAGAAAA
AAAAAACACATAGCCTACTGATTTTTTTTTGGATAAAAACTGAAAGACAACACTGTTAAAGTTT
CAATACCTTATATTTCCCAAGGAAACTGTGCCTCTGTCCAGTTGATATCATGTCAACGTCCCTG
TCCAAAACAAGCTTTACTGGCCTTCTCAGACAGAAAGAGGGTACAGATGCTGCAGCAGCAAATA
TTGCTGATCTGGTTTCTTTTCCACCAAATCCACCACCAATACGCTTAGTCTTGCAAACGACTTT
TGATTGTGGAAGACCAAGAACACTTGCAACATACTTCTGATGCTTCTGCGGAGC
Conservation Information
Conserved circRNAs osa_circ_020391 osi_circ_004893
PMCS 0.103430056
Functional Information
Coding potential Y
Potential coding position 80239064-80235983(+)
80238884-80235890(-)
80236017-80238923(-)
Potential amino acid sequence MLLRSLCKRVVGSFASNGFHSNLDLLTSIQNCSSIQI*(+)
MISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRI
NGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQ
NCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVY
TDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGA
AVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETR
SAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGG
HSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIAT
ELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKR
GIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSS
VFISETSTDKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYV
ASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRH
SFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTN
FPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVW
DELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVT
HGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGAAVLDACQQ
IKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAA
SVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLA
VLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEE
IKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTK
FGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETST
DKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAE(-)
MHHQQQPLLVQICMELQFWMLVNKSRFEWNPLLAKEPTTRLQRLRRSIRSMLQVFLVFHNQKSF
ARLSVLVVDLVEKKPDQQYLLLQHLYPLSV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b