Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d029626_circ_g.2 |
| ID in PlantcircBase | zma_circ_006569 |
| Alias | zma_circ_0000728 |
| Organism | Zea mays |
| Position | chr1: 80235888-80239077 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d029626 |
| Parent gene annotation |
Xanthine dehydrogenase 1 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d029626_circ_g.1 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d029626_T008:5 Zm00001d029626_T002:5 Zm00001d029626_T009:5 Zm00001d029626_T001:5 Zm00001d029626_T004:3 Zm00001d029626_T006:5 Zm00001d029626_T007:5 Zm00001d029626_T005:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osa_circ_020391 osi_circ_004893 |
| PMCS | 0.103430056 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
80239064-80235983(+) 80238884-80235890(-) 80236017-80238923(-) |
| Potential amino acid sequence |
MLLRSLCKRVVGSFASNGFHSNLDLLTSIQNCSSIQI*(+) MISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRI NGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQ NCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVY TDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGA AVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETR SAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGG HSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIAT ELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKR GIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSS VFISETSTDKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAEAPQKHQKYV ASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAASVPSFCLRRPVKLVLDRDVDMISTGQRH SFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLAVLERAMFHSENVYDIENIRINGQVCFTN FPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEEIKELNFHNDGVVLHYGQLLQNCTISSVW DELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVYTDGTVLVT HGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGAAVLDACQQ IKVRMEPIASKGTHNSFAEAPQKHQKYVASVLGLPQSKVVCKTKRIGGGFGGKETRSAIFAAAA SVPSFCLRRPVKLVLDRDVDMISTGQRHSFLGKYKVGFTNEGKILALDLEIYNNGGHSLDLSLA VLERAMFHSENVYDIENIRINGQVCFTNFPSNTAFRGFGGPQGLLIAENWIHHIATELQRSPEE IKELNFHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTK FGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETST DKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAE(-) MHHQQQPLLVQICMELQFWMLVNKSRFEWNPLLAKEPTTRLQRLRRSIRSMLQVFLVFHNQKSF ARLSVLVVDLVEKKPDQQYLLLQHLYPLSV*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |