Detail information of Os03g0429800_circ_g.11


General Information
CircRNA Name Os03g0429800_circ_g.11
ID in PlantcircBase osa_circ_020391
Alias NA
Organism Oryza sativa
Position chr3: 17992607-17994753  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0429800
Parent gene annotation Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204). (Os03t042980
0-01);Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204). (Os03t
0429800-02);Similar to Aldehyde oxidase and xanthine dehydrogena
se, molybdopterin binding domain containing protein, expressed.
(Os03t0429800-03);Similar to Aldehyde oxidase and xanthine dehyd
rogenase, molybdopterin binding domain containing protein, expre
ssed. (Os03t0429800-04)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0429800-03:5
Os03t0429800-04:4
Os03t0429800-01:5
Os03t0429800-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGATTTATATGGTGCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCT
GTTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAGgctccccagaagcaccaaaagtatgttg
ctaatgttcttggtcttccacaatcaagagttgtttgcaagactaagcgtattggtggtggatt
tggtggaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1044
Transcript exons: 17992607-17992846,17993183-17993467,17993543-17993764,17
994313-17994474,17994619-17994753
GCTCCCCAGAAGCACCAAAAGTATGTTGCTAATGTTCTTGGTCTTCCACAATCAAGAGTTGTTT
GCAAGACTAAGCGTATTGGTGGTGGATTTGGTGGAAAAGAAACCAGATCAGCAATATTTGCTGC
AGCAGCATCTGTAGCTGCTTATTGTTTAAGGCAGCCTGTAAAGCTTGTTTTGGACAGGGATATT
GACATGATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAGGTGGGATTTACCGATG
ATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGTCATTCACATGATTTGTC
CCTTCCAGTCCTGGAGCGTGCTATGTTTCATTCAGACAATGTCTATGATATACCAAATGTCAGA
GTCAATGGGCAAGTATGTTTCACAAATTTCCCAAGCAATACTGCTTTCAGAGGTTTTGGTGGTC
CACAAGCTATGCTGATTGCAGAGAATTGGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCC
TGAGGAGATAAAAGAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
CAAAATTGTACAATACATTCAGTATGGGATGAACTAAAGGTTTCTTGTAATTTTATGGAAGCTC
GCAAAGCTGTAATTGATTTTAACAATAATAACCGTTGGAGAAAGCGTGGCATTGCTATGGTTCC
CACCAAGTTTGGGATATCCTTCACTACAAAATTCATGAATCAGGCTGGTGCTTTAGTGCAAGTT
TACACTGATGGAACTGTCCTTGTAACGCATGGTGGGGTTGAAATGGGGCAGGGTTTACACACAA
AGGTAGCCCAAGTTGCGGCTTCATCATTCAATATCCCTCTTAGCTCTATATTTATCTCAGAAAC
AAGCACTGATAAGGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGTTCAGATTTATATGGT
GCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCTGTTGCTTCAAGAGGAA
ACCACAAGTCCTTTGCTGAG

Genomic sequence GCTCCCCAGAAGCACCAAAAGTATGTTGCTAATGTTCTTGGTCTTCCACAATCAAGAGTTGTTT
GCAAGACTAAGCGTATTGGTGGTGGATTTGGTGGAAAAGAAACCAGATCAGCAATATTTGCTGC
AGCAGCATCTGTAGCTGCTTATTGTTTAAGGCAGCCTGTAAAGCTTGTTTTGGACAGGGATATT
GACATGATGACAACTGGACAGAGGCACAGTTTCCTAGGGAAGTACAAGGTAAGTGGTTTCAAAG
AGTATGCTTTTTCAATCTCGCTGCTTTGACATCTGTTTTCCAGTCTATTTTGACAATTGTCTCT
GATGAGTGATGACTGGAGTTTGATTAGCTCAGAGCAAATAAGTTGATTTGTTCTGGACAGTTGA
AAGGCCTGTACTTGCAACAGCCATGCATTGTTAAAGATAAATTTGAATGCTATGTGCTAACTGG
TCAATATTTTGCACTACTGTCATGTAACGTGGATATAAACTGTGGAGGCTTGGCCTGTCTATAG
CGAACACTAAACTTTCTCTGGCCAAATACTTTGAAATTTACCTGACTTGCTATTAAACTTTCAG
GTGGGATTTACCGATGATGGGAAGATATTGGCCTTAGACCTTGATGTTTATAACAATGGTGGTC
ATTCACATGATTTGTCCCTTCCAGTCCTGGAGCGTGCTATGTTTCATTCAGACAATGTCTATGA
TATACCAAATGTCAGAGTCAATGGGCAAGTATGTTTCACAAATTTCCCAAGCAATACTGCTTTC
AGAGGTTTTGGTGGTCCACAAGCTATGCTGATTGCAGAGAATTGGATTCAGCACATGGCTACAG
AACTCAAGCGAAGTCCTGAGGAGATAAAAGTAAGTATAACCAGTTTTTGCGGTGGTCCTGTTCT
GCTTATACTATTGTGGGGTTAATTCATTGATTGTTTTCAGGAACTTAATTTTCAAAGTGAGGGA
TCTGTGCTTCATTATGGCCAGTTGCTTCAAAATTGTACAATACATTCAGTATGGGATGAACTAA
AGGTTTCTTGTAATTTTATGGAAGCTCGCAAAGCTGTAATTGATTTTAACAATAATAACCGTTG
GAGAAAGCGTGGCATTGCTATGGTTCCCACCAAGTTTGGGATATCCTTCACTACAAAATTCATG
AATCAGGTGAATAGGGTCCCAAACTCTATCCAGAAAGTTCTGATAGTTTAAGACTCACAGGAGT
TTGCTTTGTTAGGTGTGAACTTCACAATGCATGAATTTCATGAATGTGTTGTGTTTCCTGCTAT
TTCTGCCAGAATATGCACCCATATACCATGAAAATATTCTGAATCCTTATTGAAACAATAGAAG
TTCCACTAAAAATTAGTATCAAACAGGTAGTAAGTCGGCCATGGTTCCCCGCCAAAAGAAAAGG
CTGGCCATGTCTTGCATTACTGTGTTGTTATGTTCTGCTGCAGTTGCATTATTATTATTTTTCT
CTCGAACGCACAGATAGCTGCATGTCATTCCATTAAGAAGAATATATACAAAGGGAAGGGTGTT
AGGGGTTAAAAGCCCCTTTCCAAACCCCAAACACACCCCACGCACATACCCTGGGAAACTAAAC
ACAAATGTGCCACAAACAAAAAGACTGGTGCTATTATGTTTTGCTACAGTTGCATTGTTATTCA
TTATTCAATCTAACGGAGGTTCTGATGGATGAACAATTGCAGGCTGGTGCTTTAGTGCAAGTTT
ACACTGATGGAACTGTCCTTGTAACGCATGGTGGGGTTGAAATGGGGCAGGGTTTACACACAAA
GGTAGCCCAAGTTGCGGCTTCATCATTCAATATCCCTCTTAGCTCTATATTTATCTCAGAAACA
AGCACTGATAAGGTGAGTTTTGGCATATGGACTTGCTACATTTGATTTGCATGGTCTATCAATG
TATTCAATGAAGATGTTATTCTTATATGTTACTACTTTATTTCCAATGATGGGTTAATCAGTAA
TCACACATGTGCTCATCTCAATACTTAGGTACCAAATGCAACACCAACAGCAGCCTCTGCTAGT
TCAGATTTATATGGTGCTGCAGTTTTGGATGCTTGTCAGCAAATTATGGCTCGGATGGAACCTG
TTGCTTCAAGAGGAAACCACAAGTCCTTTGCTGAG
Conservation Information
Conserved circRNAs osi_circ_004893* zma_circ_006569
PMCS 0.264446681
Functional Information
Coding potential Y
Potential coding position 17992803-17994750(+)
17994627-17992745(+)
Potential amino acid sequence MMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRV
NGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQ
NCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQAGALVQVY
TDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETSTDKVPNATPTAASASSDLYGA
AVLDACQQIMARMEPVASRGNHKSFAEAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETR
SAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGG
HSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMAT
ELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKR
GIAMVPTKFGISFTTKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSS
IFISETSTDKVPNATPTAASASSDLYGAAVLDACQQIMARMEPVASRGNHKSFAEAPQKHQKYV
ANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRH
SFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTN
FPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVW
DELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQAGALVQVYTDGTVLVT
HGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETSTDKVPNATPTAASASSDLYGAAVLDACQQ
IMARMEPVASRGNHKSFAEAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAA
SVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLP
VLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEE
IKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTK
FGISFTTKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETST
DKVPNATPTAASASSDLYGAAVLDACQQIMARMEPVASRGNHKSFAE(+)
MQHQQQPLLVQIYMVLQFWMLVSKLWLGWNLLLQEETTSPLLRLPRSTKSMLLMFLVFHNQELF
ARLSVLVVDLVEKKPDQQYLLQQHL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017