Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0429800_circ_g.11 |
ID in PlantcircBase | osa_circ_020391 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 17992607-17994753 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0429800 |
Parent gene annotation |
Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204). (Os03t042980 0-01);Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204). (Os03t 0429800-02);Similar to Aldehyde oxidase and xanthine dehydrogena se, molybdopterin binding domain containing protein, expressed. (Os03t0429800-03);Similar to Aldehyde oxidase and xanthine dehyd rogenase, molybdopterin binding domain containing protein, expre ssed. (Os03t0429800-04) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0429800-03:5 Os03t0429800-04:4 Os03t0429800-01:5 Os03t0429800-02:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004893* zma_circ_006569 |
PMCS | 0.264446681 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17992803-17994750(+) 17994627-17992745(+) |
Potential amino acid sequence |
MMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRV NGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQ NCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQAGALVQVY TDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETSTDKVPNATPTAASASSDLYGA AVLDACQQIMARMEPVASRGNHKSFAEAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETR SAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGG HSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMAT ELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKR GIAMVPTKFGISFTTKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSS IFISETSTDKVPNATPTAASASSDLYGAAVLDACQQIMARMEPVASRGNHKSFAEAPQKHQKYV ANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRH SFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTN FPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEEIKELNFQSEGSVLHYGQLLQNCTIHSVW DELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTKFGISFTTKFMNQAGALVQVYTDGTVLVT HGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETSTDKVPNATPTAASASSDLYGAAVLDACQQ IMARMEPVASRGNHKSFAEAPQKHQKYVANVLGLPQSRVVCKTKRIGGGFGGKETRSAIFAAAA SVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFTDDGKILALDLDVYNNGGHSHDLSLP VLERAMFHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENWIQHMATELKRSPEE IKELNFQSEGSVLHYGQLLQNCTIHSVWDELKVSCNFMEARKAVIDFNNNNRWRKRGIAMVPTK FGISFTTKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETST DKVPNATPTAASASSDLYGAAVLDACQQIMARMEPVASRGNHKSFAE(+) MQHQQQPLLVQIYMVLQFWMLVSKLWLGWNLLLQEETTSPLLRLPRSTKSMLLMFLVFHNQELF ARLSVLVVDLVEKKPDQQYLLQQHL*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |