Detail information of Zm00001d029626_circ_g.1


General Information
CircRNA Name Zm00001d029626_circ_g.1
ID in PlantcircBase zma_circ_006568
Alias zma_circ_0000727
Organism Zea mays
Position chr1: 80235024-80238226  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d029626
Parent gene annotation Xanthine dehydrogenase 1
Parent gene strand -
Alternative splicing Zm00001d029626_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d029626_T006:5
Zm00001d029626_T005:5
Zm00001d029626_T004:5
Zm00001d029626_T009:5
Zm00001d029626_T007:5
Zm00001d029626_T008:5
Zm00001d029626_T001:5
Zm00001d029626_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAAGATGCTTTTAGTTCATCCCAAACTGAACTTATTGTACAATTCTGGAGCAACTGGCCATA
ATGTAGCACAACTCCATCATTGTGAAAATTAAGTTCctttaatagagaaaccttgaaattcaga
ggtatatcatttacagagggtattttgtaagaaccaggaccgcaggtgaagaggtgtccaggtc
gaatccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAATAGAGAAACCTTGAAATTCAGAGGTATATCATTTACAGAGGGTATTTTGTAAGAACCA
GGACCGCAGGTGAAGAGGTGTCCAGGTCGAATCCACTTATGGTTATCATCCCCCCATTTTAGCT
CTTCTATGGCTGCCCAGCCCAATCCTTGGATAAAAGCTCCTTCAATCTGAAATACAGTACGTTA
AACTACAGGAAATATGTAGAAGGAACCTCTCTTTCGTGTTGAAGCAAATTAGCAAAACATTTCC
TCCGCAGAGCACATACCTGGCCAATGTCAATTGCTGGATTAATTGAAAATCCGAGATCCATAAC
AATATCAGCTGTCCTTGTGTAAAAATCCCCAGTTAGGGTGTCGATCTCAACTTCTGCAAATGCA
GCTCCATACGTGAAATAATTGAATGGAGTTCCCTTGCCAATCGTCCAGTCAAACCCAATATTAG
GTGTAGCATAAAACCCATGAGCAGAGAGATCCACACGTTCCATGTAGCATGCTTGAGCCAACTG
GCAAAAAGCATAATATCCACATTTTAGTTAAACCATAAAATTATGGAGTCAAAATTTTAAAAAG
ATAATTTTAATTCAATAATACTACAGTATCAGGTGTTTAGGAGTGACAAAATTATTTAAAAACT
TGGAAAACAGTCAATTTGTTAGTTCCAACAGTTAAAACAATAAGTTGGGAACATCTAAACCAAT
GATGATTACTTCAAATAAAGCTAACACATACCTACAAATTATCAAACGTACAAACAAACTTATG
ATTTTCACAGCTCAATGAAGGTTTCAGCTTTGTGTTCACATCAGAATCAATGATGTAGTCCAAC
CACCAATGAAAGAGGATAAGACATGACATTACCTCTGCAAACGAGTTGTGGGTTCCTTTGCTAG
CAATGGGTTCCATTCGAACCTTGATTTGTTGACAAGCATCCAAAACTGCAGCTCCATACAGATC
TGAACTAGCAGAGGCTGCTGTTGGTGATGCATTAGGAACCTAAACAGATGGAATCCCATCACCT
CATTGTATTGGCACAACTTATAAATAAAAGTAATGAAAAAAAGTACAACTAGTGTAAAAATCAT
GCAGAAGGGGTACATCCATGTGTCGGACCTCACCTTATCAGTACTTGTCTCTGATATAAATACA
GAGCTAAGAGGGATATTGAATGACGAGGCAGCAACTTGGGCTACCTTTGTGTGCAAACCCTGTC
CCATCTCGACCCCGCCATGTGTTACCAGGACAGTGCCATCAGTGTAAACTTGCACAAGAGCGCC
AGCCTGCATTATTTCATCGACCGAAACTTATCTTAGATTGAATAAGGATGATGAAACTAAGAAC
ATAAGTCAATGTCATGTCTAATTTACTGCTTCTTTGATAATTTTAGATGGAACCTCTATGATCC
GAAAATGGGTTCCAAAAAAAATTGGGGATGGCACTGGAGTATATTATGGCCCTGTTTGTTTCAG
ATTATAACCTCTCCAGATTATATAATCCAGTGCAAATAATTCAGTAGGTAAACAAACACCTAGA
TTATGAGTACAGATTATATAATCTAAACTCCAGATTATGATAATCTCATAATCTTCTCAAGAGT
AGCTTATTTGAGATTATTTTGGCAAAAGACCCACTACCCATGGTTATGTAAATAGAAATTACAA
TATATGTCATCCTTTTTTTCTCACCTCAAATTAACAAATAAGGGTATTGTTGTCTTTGTGAATA
ATGTACATGTGTATAATCTAAACTACCAAACAACCATATGTAGATTATAATCTAGATTATATAA
TTTAGATTATAATCTAGATTATATAATCTATAATCTGAAACAAACATGCCCTATGGCAAATAAA
TAAACACAAACCAAGGTCAGTGTCACTGCACCAATAGAGTCCAAATATTTCAGTCACACACCCA
ATATCGTGAAGGGTCACAAAACCACTGAGAGGATACACTGATACTGCTGACAATATAGTATAAC
ACTATAAACATCAAATGACATGTTGTGTTATGGCAGTACATTCAACACAAAAATGATGTATGGG
GCTAAGCAGAAACCAAAATAAAATAAGAAACTGTGTGGGTCTGTGGTCTCAACTAAAATATGTA
TGGAGCTGTGATCTGTGGTCTCAAATAAAACAACAGAAAAACAACCAATTTTATGGCAATTGTA
ACTAAAATATGTGAGTGTATAATTTACCATAAGTTAAACAACTGTGTGGGTCTGTGGTCTCAAC
TATGTTGGACCGGACCGCCAACACATGGCGTGTCCATCGGGGCCACCCGCACACACGGCGCGCC
CATCCAGGCTGTCGGGCCACGACACACGCGCCCGTACGTATAGCAGCGGGCTTTAGGTCTCTTG
GGCCAATACTCCCCCCAAAAAGCTAGCCTATTAGGGGGTTGCACCCTCAACCATATAAACCTTG
CTTTCTCACTCTCACTAGACAATGTGGGACTATTCCCAACAATCTCCCCCTCACACATTGTGAG
CCGAGATTTGTCTGAGAATGCACTGGACCAACCTGGCTTTGATACCAATTGTTGGACCGGACCG
CCAACACATGGCGTGTCCATCGGGGCCACCCGCACACACGGCGCGCCCATCCAGGCTGTCGGGC
CACGACACACGCGCCCGTACGTATAGCAGCGGGCTTTAGGTCTCTTGGGCCAATCTGTGTCGTG
GCCCGACAGCCTGGATGGGCGCGCCGTGTGTGCGGGTGGCCCCGATGGACACGCCATGTGTTGG
CGGTCCGGTCCAACAATCCCCCCAAAAAGCTAGCCTATTAGGGGGTTGCACCCTCAACCATATA
AACCTTGCTTTCTCACTCTCACTAGACAATGTGGGACTATTCCCAACAAACTAATCACACCTTT
AAAGAATTTTCATGCATCAAATATCAAAACTAAAAGGAAATCAGTAATCCCACAAACTCCAATT
TGTAATGATAGACTGGCAGAGCTTCATGGTGGATCACCTGATTCATGAATTTTGCAGTGAAGGA
TATGCCAAATTTTGTCGGAATCATGGCAATTCCTCGCTTCCTCCAGCGGTTATTACTGTTAAAA
TTATTTATGGCTTTGCGAGCTTCCACAAAATTACAAGATGCTTTTAGTTCATCCCAAACTGAAC
TTATTGTACAATTCTGGAGCAACTGGCCATAATGTAGCACAACTCCATCATTGTGAAAATTAAG
TTC
Conservation Information
Conserved circRNAs NA
PMCS 0.052540353
Functional Information
Coding potential Y
Potential coding position 80238057-80235026(-)
Potential amino acid sequence MIPTKFGISFTAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFI
SETSTDKVPNASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAELAQACYMERVDL
SAHGFYATPNIGFDWTIGKGTPFNYFTYGAAFAEVEIDTLTGDFYTRTADIVMDLGFSINPAID
IGQIEGAFIQGLGWAAIEELKWGDDNHKWIRPGHLFTCGPGSYKIPSVNDIPLNFKVSLLKELN
FHNDGVVLHYGQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISF
TAKFMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPN
ASPTAASASSDLYGAAVLDACQQIKVRMEPIASKGTHNSFAELAQACYMERVDLSAHGFYATPN
IGFDWTIGKGTPFNYFTYGAAFAEVEIDTLTGDFYTRTADIVMDLGFSINPAIDIGQIEGAFIQ
GLGWAAIEELKWGDDNHKWIRPGHLFTCGPGSYKIPSVNDIPLNFKVSLLKELNFHNDGVVLHY
GQLLQNCTISSVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGA
LVQVYTDGTVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASS
DLYGAAVLDACQQIKVRMEPIASKGTHNSFAELAQACYMERVDLSAHGFYATPNIGFDWTIGKG
TPFNYFTYGAAFAEVEIDTLTGDFYTRTADIVMDLGFSINPAIDIGQIEGAFIQGLGWAAIEEL
KWGDDNHKWIRPGHLFTCGPGSYKIPSVNDIPLNFKVSLLKELNFHNDGVVLHYGQLLQNCTIS
SVWDELKASCNFVEARKAINNFNSNNRWRKRGIAMIPTKFGISFTAKFMNQAGALVQVYTDGTV
LVTHGGVEMGQGLHTKVAQVAASSFNIPLSSVFISETSTDKVPNASPTAASASSDLYGAAVLDA
CQQIKVRMEPIASKGTHNSFAELAQACYMERVDLSAHGFYATPNIGFDWTIGKGTPFNYFTYGA
AFAEVEIDTLTGDFYTRTADIVMDLGFSINPAIDIGQIEGAFIQGLGWAAIEELKWGDDNHKWI
RPGHLFTCGPGSYKIPSVNDIPLNFKVSLLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b