Detail information of BGIOSGA014757_circ_g.7


General Information
CircRNA Name BGIOSGA014757_circ_g.7
ID in PlantcircBase osi_circ_014554
Alias Chr04:25918955_25920399(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23990854-23992298  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014757_circ_g.6 BGIOSGA014757_circ_g.8 BGIOSGA014757_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA014757-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATTACAGAGATCTCCTTGTTTGTTCATCTTCCTAGACACCATGGAAATGCTTCGTGAGACT
TTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAGCccatgactggacatccagcttttggaat
actatcagaacgcaagcctccaaaaggatttaagcctgcatgctccacaaggatacatgcatca
aacccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGACTGGACATCCAGCTTTTGGAATACTATCAGAACGCAAGCCTCCAAAAGGATTTAAGCC
TGCATGCTCCACAAGGATACATGCATCAAACCCAACAGCCTCGTAGAAATCTCCCACCTGAATG
GAGAAAGGTTATTCCGTTATAGGTCTATGTATTTGGATTTTTTTTTCCAGCTTGAATGTAAGAG
GAAAACCAGAAGAACGCTGGAGAGATACATTAATTCTGAGTATTATATTTAGCAAAATGCTGAA
AGCGAATCCAGATTGACAGATGGAAATGGGTATGGAGGGGTATGTAGTGAAACAAAAAGTAAAT
TGTTTTGGAAACAAGGACAGCAGTGCACGTAAGTTATGGCATAGTAAAGATTTCCCAGAGGCAC
ATAAAACACACCATCACATGTCATAGATGTTCAGAAAGAAACATCTATGACATTATAGGTTTTG
ATAACTAAAAATTCCCAGCTAAGAAATTCTTGGCATTTCTCCAGATTTTCGCAAAAAAGACGAT
CAAGCATGTGAACAAAATAAAAGAATAGAATAGCATTACTCTGCAAAGTAGAACTTCACGAGGA
AACTTCGATTTGAATTGCAACATTTCCGTGTTCAGGCTTCCATCCTTCAAGCTGCAAAGATTCA
TATCAACATTTGTGTTAATGAAAAGAAAGTAAATACCAAGAAATGTGCCTGATTTGACCAACAC
AAAAATGGCTCAAGCAAGAAATATTTAATAAAATGAAAGAAAAATAACCATGGAAGAAAGGAAT
TGATTATATATGATACAAAATTACAATAAACTTTCTCCAAACTAGTCAGATTGCTCTGGTAGAA
ATTCTTTTTCAAGACATACATGAAGCCGTGATTGCCATAAAATTCTCCAATGATTAAGCAAAGA
ATAGGAACATACAAATTGTAAGATTAATAGAACTAAGCAAACAAATGGAGTAATGAACACATAC
ATATTTCACTTTAGAATATGAAAAACTGAAGTAATTCACAGTAACTTAAAAATAGTACAACGTC
ATGCTAGCCTTCTATTTCTTAAAGAAAATGTGAAAGAAATGATCATTGCATAATTATATTAAGC
ATGAGCATCTGATTCACCTTCCATTTCTTAAAGTTGGATCCAATCCTAAAATATTTGAATACAC
AAGTCTCTGAGTCAATTGCATTGATGATGGTTTCCTGCACCTCTCCATTTTCTGAGAACATTAA
ACAGAATAACAGCAATAACAAAGCTGAAGCATTAGTGATTCCCTGTCAATACATTGGAGAGAAA
AAAAATACATATATGCCAACTTTTGCAAGCACCTCTTTCCACCACAGAATATGTGGCAGCATGC
CTTCATTACAGAGATCTCCTTGTTTGTTCATCTTCCTAGACACCATGGAAATGCTTCGTGAGAC
TTTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021