Detail information of BGIOSGA014757_circ_g.8


General Information
CircRNA Name BGIOSGA014757_circ_g.8
ID in PlantcircBase osi_circ_014555
Alias Chr04:25919505_25920399(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23991404-23992298  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014757_circ_g.6 BGIOSGA014757_circ_g.7 BGIOSGA014757_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA014757-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATTACAGAGATCTCCTTGTTTGTTCATCTTCCTAGACACCATGGAAATGCTTCGTGAGACT
TTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAGCctctgcaaagtagaacttcacgaggaaa
cttcgatttgaattgcaacatttccgtgttcaggcttccatccttcaagctgcaaagattcata
tcaacatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCAAAGTAGAACTTCACGAGGAAACTTCGATTTGAATTGCAACATTTCCGTGTTCAGGCT
TCCATCCTTCAAGCTGCAAAGATTCATATCAACATTTGTGTTAATGAAAAGAAAGTAAATACCA
AGAAATGTGCCTGATTTGACCAACACAAAAATGGCTCAAGCAAGAAATATTTAATAAAATGAAA
GAAAAATAACCATGGAAGAAAGGAATTGATTATATATGATACAAAATTACAATAAACTTTCTCC
AAACTAGTCAGATTGCTCTGGTAGAAATTCTTTTTCAAGACATACATGAAGCCGTGATTGCCAT
AAAATTCTCCAATGATTAAGCAAAGAATAGGAACATACAAATTGTAAGATTAATAGAACTAAGC
AAACAAATGGAGTAATGAACACATACATATTTCACTTTAGAATATGAAAAACTGAAGTAATTCA
CAGTAACTTAAAAATAGTACAACGTCATGCTAGCCTTCTATTTCTTAAAGAAAATGTGAAAGAA
ATGATCATTGCATAATTATATTAAGCATGAGCATCTGATTCACCTTCCATTTCTTAAAGTTGGA
TCCAATCCTAAAATATTTGAATACACAAGTCTCTGAGTCAATTGCATTGATGATGGTTTCCTGC
ACCTCTCCATTTTCTGAGAACATTAAACAGAATAACAGCAATAACAAAGCTGAAGCATTAGTGA
TTCCCTGTCAATACATTGGAGAGAAAAAAAATACATATATGCCAACTTTTGCAAGCACCTCTTT
CCACCACAGAATATGTGGCAGCATGCCTTCATTACAGAGATCTCCTTGTTTGTTCATCTTCCTA
GACACCATGGAAATGCTTCGTGAGACTTTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021