Detail information of BGIOSGA014757_circ_g.6


General Information
CircRNA Name BGIOSGA014757_circ_g.6
ID in PlantcircBase osi_circ_014553
Alias Chr04:25896146_25898258(MH63RS2), Chr04:25918287_25920399(ZS97RS2), Chr04:25896146_25898258(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23990186-23992298  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014757_circ_g.7 BGIOSGA014757_circ_g.8 BGIOSGA014757_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA014757-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATTACAGAGATCTCCTTGTTTGTTCATCTTCCTAGACACCATGGAAATGCTTCGTGAGACT
TTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAGCccacagagtaaccacatcgagtcaaatc
atccaatgtctgccgcaaattctgtaaggaaatgtgctctgatgtcatagaatattatcaacat
aatgtaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACAGAGTAACCACATCGAGTCAAATCATCCAATGTCTGCCGCAAATTCTGTAAGGAAATGTG
CTCTGATGTCATAGAATATTATCAACATAATGTAAAAAGATGTGCATTATTAGTTATAAAGTAT
AAACCATATTAAATCAATGTTTGCCACAAGTTCTGAATGCTCTTTTCATACTATTGCCAACAGA
ACAATAAGATATGAAGCATGCTAACTTCAATTCCTAGCATGTCTCCTAGTTCAAACCATATTGG
TGAATAAAGCTTGAACTATATTGATGGATCATGAGCATACGAAATGCTAGACAGGTGTGATGTA
AGTAACTAACAAAATAAATAAGTCTTCCATATCCACAATGTGTAATTGCAAAAAAAAGGCAGGC
AACTTACAAAATGTTATTGTGGTTAGACTGAAACTTATATGTAGATAAAAGGCAGCAGTAAGTG
CCGCACAGTATGGTACTGATACGCTGACTCTTCAAAAGCATAACAAAGGAACGCAACAAGATCT
GTTTCACAGAAGAAGTTCAAGCTCCTCGTTCTCCACTTTTTCAAAAAACAAATTACATAATGAT
GCAAAAATTTGATAATTAACTAGGCAGATCACTATGATAGTTCTTAAAGCAATCCTAATTTCAG
AGCATCAGCATAGTTATGTAACAGTTTACCATGACTGGACATCCAGCTTTTGGAATACTATCAG
AACGCAAGCCTCCAAAAGGATTTAAGCCTGCATGCTCCACAAGGATACATGCATCAAACCCAAC
AGCCTCGTAGAAATCTCCCACCTGAATGGAGAAAGGTTATTCCGTTATAGGTCTATGTATTTGG
ATTTTTTTTTCCAGCTTGAATGTAAGAGGAAAACCAGAAGAACGCTGGAGAGATACATTAATTC
TGAGTATTATATTTAGCAAAATGCTGAAAGCGAATCCAGATTGACAGATGGAAATGGGTATGGA
GGGGTATGTAGTGAAACAAAAAGTAAATTGTTTTGGAAACAAGGACAGCAGTGCACGTAAGTTA
TGGCATAGTAAAGATTTCCCAGAGGCACATAAAACACACCATCACATGTCATAGATGTTCAGAA
AGAAACATCTATGACATTATAGGTTTTGATAACTAAAAATTCCCAGCTAAGAAATTCTTGGCAT
TTCTCCAGATTTTCGCAAAAAAGACGATCAAGCATGTGAACAAAATAAAAGAATAGAATAGCAT
TACTCTGCAAAGTAGAACTTCACGAGGAAACTTCGATTTGAATTGCAACATTTCCGTGTTCAGG
CTTCCATCCTTCAAGCTGCAAAGATTCATATCAACATTTGTGTTAATGAAAAGAAAGTAAATAC
CAAGAAATGTGCCTGATTTGACCAACACAAAAATGGCTCAAGCAAGAAATATTTAATAAAATGA
AAGAAAAATAACCATGGAAGAAAGGAATTGATTATATATGATACAAAATTACAATAAACTTTCT
CCAAACTAGTCAGATTGCTCTGGTAGAAATTCTTTTTCAAGACATACATGAAGCCGTGATTGCC
ATAAAATTCTCCAATGATTAAGCAAAGAATAGGAACATACAAATTGTAAGATTAATAGAACTAA
GCAAACAAATGGAGTAATGAACACATACATATTTCACTTTAGAATATGAAAAACTGAAGTAATT
CACAGTAACTTAAAAATAGTACAACGTCATGCTAGCCTTCTATTTCTTAAAGAAAATGTGAAAG
AAATGATCATTGCATAATTATATTAAGCATGAGCATCTGATTCACCTTCCATTTCTTAAAGTTG
GATCCAATCCTAAAATATTTGAATACACAAGTCTCTGAGTCAATTGCATTGATGATGGTTTCCT
GCACCTCTCCATTTTCTGAGAACATTAAACAGAATAACAGCAATAACAAAGCTGAAGCATTAGT
GATTCCCTGTCAATACATTGGAGAGAAAAAAAATACATATATGCCAACTTTTGCAAGCACCTCT
TTCCACCACAGAATATGTGGCAGCATGCCTTCATTACAGAGATCTCCTTGTTTGTTCATCTTCC
TAGACACCATGGAAATGCTTCGTGAGACTTTCCTTGGTTTAGACCAGGACCTCCTGTTAAATAG
C
Conservation Information
Conserved circRNAs osa_circ_024509
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021