Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037377_circ_g.4 |
ID in PlantcircBase | zma_circ_009032 |
Alias | zma_circ_0002312 |
Organism | Zea mays |
Position | chr6: 123582186-123589081 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037377 |
Parent gene annotation |
binding |
Parent gene strand | - |
Alternative splicing | Zm00001d037377_circ_g.1 Zm00001d037377_circ_g.2 Zm00001d037377_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037377_T061:17 Zm00001d037377_T034:17 Zm00001d037377_T055:17 Zm00001d037377_T005:10 Zm00001d037377_T059:17 Zm00001d037377_T026:17 Zm00001d037377_T065:17 Zm00001d037377_T031:17 Zm00001d037377_T029:17 Zm00001d037377_T068:17 Zm00001d037377_T073:17 Zm00001d037377_T074:2 Zm00001d037377_T008:17 Zm00001d037377_T006:17 Zm00001d037377_T054:17 Zm00001d037377_T064:17 Zm00001d037377_T010:17 Zm00001d037377_T056:17 Zm00001d037377_T047:17 Zm00001d037377_T069:17 Zm00001d037377_T009:16 Zm00001d037377_T052:5 Zm00001d037377_T011:13 Zm00001d037377_T066:17 Zm00001d037377_T019:17 Zm00001d037377_T012:17 Zm00001d037377_T002:17 Zm00001d037377_T060:17 Zm00001d037377_T036:17 Zm00001d037377_T070:17 Zm00001d037377_T053:17 Zm00001d037377_T007:17 Zm00001d037377_T004:12 Zm00001d037377_T067:17 Zm00001d037377_T076:16 Zm00001d037377_T003:17 Zm00001d037377_T037:17 Zm00001d037377_T063:18 Zm00001d037377_T025:16 Zm00001d037377_T032:14 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.114103031 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
123588622-123582188(+) 123589028-123588982(-) |
Potential amino acid sequence |
MFKFSSHFAESLNKRDMFRKHPMILFCRSGASSWLSCRSDMYFIISCCSLCFCRRICSRAFIST LSKYVAAVTQCFTLPFIGNSGGNNEPHKIELIDSGL*(+) MKGRVKHWVTAATYFDKVEMKALEQILLQKQRLQQEMMKYISLRQLSQEDAPDLQKRIIGCFRN ISRLFSDSAKCEENLNMLHQLKDADIWKIFTSLLNCSTTFEKAWSLRADLLKIFGEKHVLYNFV GALAMGCSYLLVNKEYAKEILSEASEQKTSGNTKLISSCMNLLTAISSFFPSLLSGLEEDIVEL LKEDNEVLKEGIAHVLSKAGGTIREQLASTSSLDLLLERLCLEGTRRQAKYSVHALAAITKDDG LMSLSVLYKRLVDLLEEKKVNIPSILQSLGCIAQIAMPIFETRKEEIISFITKKILECNDDMVR NSSNKSEWGDSTENCLLKIYGIKTLVKSYLPCKDAHAQPGIEKLIDILKNILTYGDVSPNMVSS AADKAHLRLAAAKAVLRLSKQWDHKVPVDVFYLTLRISQIHISILFQDDFPQVRKLFLCKVLQY IKERALDAKYACTFMFGVNDYHAPPYEEFKYNLTEVVQICQQVKMRQLSVQADMDLLTAYPEYI ISFLVHALAHDPSSPEIEEHENVNAFGPIYWRLYLILSILLGEEGLQHSVPGMKKDSFTTIISI FKSIKSSQDVVDGSKTKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQLYTPLHDNQNENS VENNEQIWLGCEKVLAHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGKIVKLLKSRGERK IGEKQKAPSSSSVNAENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKDSNQKPLDFSSPK RKRSISKSRPHSAKGSKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTELLVSPSTRTPVS KQNKGAKKSNINILSSVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLLKARVNQLYFVWF IVPTRVSNERKSETLGYSCDIL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |