Detail information of Zm00001d037377_circ_g.4


General Information
CircRNA Name Zm00001d037377_circ_g.4
ID in PlantcircBase zma_circ_009032
Alias zma_circ_0002312
Organism Zea mays
Position chr6: 123582186-123589081  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d037377
Parent gene annotation binding
Parent gene strand -
Alternative splicing Zm00001d037377_circ_g.1 Zm00001d037377_circ_g.2 Zm00001d037377_circ_g.3
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d037377_T061:17
Zm00001d037377_T034:17
Zm00001d037377_T055:17
Zm00001d037377_T005:10
Zm00001d037377_T059:17
Zm00001d037377_T026:17
Zm00001d037377_T065:17
Zm00001d037377_T031:17
Zm00001d037377_T029:17
Zm00001d037377_T068:17
Zm00001d037377_T073:17
Zm00001d037377_T074:2
Zm00001d037377_T008:17
Zm00001d037377_T006:17
Zm00001d037377_T054:17
Zm00001d037377_T064:17
Zm00001d037377_T010:17
Zm00001d037377_T056:17
Zm00001d037377_T047:17
Zm00001d037377_T069:17
Zm00001d037377_T009:16
Zm00001d037377_T052:5
Zm00001d037377_T011:13
Zm00001d037377_T066:17
Zm00001d037377_T019:17
Zm00001d037377_T012:17
Zm00001d037377_T002:17
Zm00001d037377_T060:17
Zm00001d037377_T036:17
Zm00001d037377_T070:17
Zm00001d037377_T053:17
Zm00001d037377_T007:17
Zm00001d037377_T004:12
Zm00001d037377_T067:17
Zm00001d037377_T076:16
Zm00001d037377_T003:17
Zm00001d037377_T037:17
Zm00001d037377_T063:18
Zm00001d037377_T025:16
Zm00001d037377_T032:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTATGTCGCAGCTGTAACCCAATGTTTCACTCTTCCTTTCATTGGAAACTCTGGTGGGAAC
AATGAACCACACAAAATAGAGTTGATTGACTCTGGCctttagtaaaccagaaattggttttgac
ttttgccttttgagtgacccatttagacttctcggttcaacagttctcttagtactgtctgcat
cagcagac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2710
Transcript exons: 123582186-123582287,123582379-123582927,123583021-123583
101,123583183-123583326,123583420-123583570,123585705-12
3585904,123586003-123586161,123586258-123586375,12358645
6-123586592,123586682-123586747,123586836-123586988,1235
87109-123587235,123587337-123587488,123588139-123588321,
123588530-123588718,123588793-123588841,123588932-123589
081
CTTTAGTAAACCAGAAATTGGTTTTGACTTTTGCCTTTTGAGTGACCCATTTAGACTTCTCGGT
TCAACAGTTCTCTTAGTACTGTCTGCATCAGCAGACTTCTTTGGAACACTGCTCAAAATATTAA
TATTGGATTTCTTAGCACCCTTATTTTGTTTAGATACAGGGGTTCTAGTGCTTGGAGATACTAA
CAGTTCTGTATCAGTTGAATCATCTCTGTCTTTCTCCTTCATCTTAGTTTCCAAGGAGATATTG
GTCCTCTCTGAGTTAGGAGTATGTAGTAGACGCTCATCACTGCTTTTACTACCTTTTGCTGAAT
GTGGTCTACTCTTAGAAATTGATCTTTTGCGTTTAGGTGAAGAAAAATCAAGTGGTTTCTGGTT
ACTATCTTTTGCATTTGTATGACGCTTCTCAGACTTGTCCTTATGCGATTCCTCCAAATCTTCT
TGATTGTTTAAGTTAATTTCTCTTACTAAACCCAGAACATCATCGTTCTCTGCATTTACTGAAC
TACTAGATGGTGCCTTCTGCTTTTCCCCAATCTTCCTTTCTCCTCGTGATTTAAGAAGTTTGAC
AATTTTGCCAAGAGGAACTTCATTTCCAAATTCATCAGTCACATCAATAAGCATCTTATGTTTG
GGAGATTCAACCTTATCCATATTTGCAGTCCTTACAGCCTCAAAATGGGCCAGTACTTTCTCAC
ATCCCAGCCAAATCTGCTCATTATTCTCCACAGAATTTTCATTTTGGTTATCATGAAGCGGCGT
GTAAAGTTGAGCAGGCAATGGAACTGTTTGAGCTTCTGATAAACTCGTTTGGTCTTGGCATAAC
CTCTTTGCAATAAGAGTACCAAGATCACATATAGCACACACAGTCTTGGTCTTACTTCCATCAA
CCACATCCTGTGAAGATTTTATACTTTTGAATATAGATATTATTGTAGTGAAGCTGTCCTTTTT
CATGCCTGGGACACTATGTTGCAAACCTTCTTCCCCCAGGAGGATTGAAAGAATCAGATATAGT
CGCCAGTAAATTGGACCAAATGCATTGACGTTTTCATGTTCTTCAATTTCCGGGGATGAAGGAT
CATGAGCGAGGGCATGAACCAAAAAGGAAATTATGTATTCTGGGTAAGCCGTCAACAAATCCAT
ATCTGCTTGGACTGAAAGTTGGCGCATCTTAACTTGTTGGCATATCTGAACCACTTCAGTCAGA
TTGTACTTGAACTCTTCGTACGGCGGGGCATGATAATCGTTAACACCAAACATGAAGGTGCAGG
CATATTTTGCATCCAAGGCCCTTTCCTTGATATATTGCAGAACTTTACAAAGAAATAATTTCCT
CACCTGAGGAAAATCATCCTGGAAAAGAATAGAAATATGAATCTGTGAAATCCTCAAAGTCAAA
TAAAATACATCAACAGGCACTTTATGGTCCCATTGTTTTGATAAGCGGAGAACAGCTTTTGCTG
CGGCAAGCCTCAAATGGGCCTTATCAGCAGCACTTGAGACCATATTTGGAGATACGTCACCGTA
AGTAAGAATATTCTTCAGAATATCAATTAACTTCTCTATTCCTGGCTGTGCATGAGCATCTTTG
CAAGGTAGATAGCTCTTCACCAATGTTTTGATGCCATAAATCTTTAGCAAACAATTCTCTGTGC
TATCACCCCATTCAGATTTATTAGAAGAATTTCGAACCATATCATCGTTGCACTCAAGAATTTT
TTTAGTTATGAAACTTATTATCTCTTCTTTTCGGGTTTCAAAAATTGGCATCGCTATCTGGGCT
ATACAACCCAAAGATTGCAAGATAGATGGTATATTCACTTTCTTCTCTTCCAACAAATCCACAA
GCCTCTTGTAAAGAACAGATAGTGACATAAGACCATCATCTTTTGTAATGGCAGCAAGTGCATG
AACAGAGTATTTAGCCTGCCTCCGTGTACCCTCTAAGCATAAACGCTCTAATAGAAGATCAAGG
GAACTTGTTGAGGCTAACTGTTCACGAATAGTGCCACCAGCCTTCGATAACACATGTGCAATAC
CCTCTTTAAGCACTTCATTATCCTCTTTCAGGAGTTCAACAATGTCTTCTTCAAGTCCAGACAA
AAGAGACGGAAAGAAACTAGATATTGCCGTTAGAAGATTCATGCATGATGAGATGAGTTTTGTA
TTCCCAGAAGTCTTCTGTTCAGAAGCTTCAGAAAGGATCTCTTTTGCATACTCCTTGTTTACAA
GTAAATATGAACATCCCATTGCTAATGCGCCAACAAAATTATAAAGCACATGTTTTTCACCAAA
TATCTTAAGCAAATCTGCCCGAAGAGACCAAGCTTTCTCAAATGTAGTTGAACAATTAAGCAGG
CTAGTGAATATTTTCCAGATATCAGCATCTTTTAGCTGATGAAGCATGTTCAAGTTCTCCTCAC
ACTTTGCAGAATCACTAAATAAGCGAGATATGTTCCGGAAACATCCGATGATTCTTTTTTGCAG
ATCAGGGGCATCTTCCTGGCTTAGTTGCCGAAGTGATATGTATTTCATCATTTCTTGTTGCAGT
CTTTGCTTCTGCAGGAGAATTTGTTCAAGAGCTTTCATCTCAACTTTATCAAAGTATGTCGCAG
CTGTAACCCAATGTTTCACTCTTCCTTTCATTGGAAACTCTGGTGGGAACAATGAACCACACAA
AATAGAGTTGATTGACTCTGGC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.114103031
Functional Information
Coding potential Y
Potential coding position 123588622-123582188(+)
123589028-123588982(-)
Potential amino acid sequence MFKFSSHFAESLNKRDMFRKHPMILFCRSGASSWLSCRSDMYFIISCCSLCFCRRICSRAFIST
LSKYVAAVTQCFTLPFIGNSGGNNEPHKIELIDSGL*(+)
MKGRVKHWVTAATYFDKVEMKALEQILLQKQRLQQEMMKYISLRQLSQEDAPDLQKRIIGCFRN
ISRLFSDSAKCEENLNMLHQLKDADIWKIFTSLLNCSTTFEKAWSLRADLLKIFGEKHVLYNFV
GALAMGCSYLLVNKEYAKEILSEASEQKTSGNTKLISSCMNLLTAISSFFPSLLSGLEEDIVEL
LKEDNEVLKEGIAHVLSKAGGTIREQLASTSSLDLLLERLCLEGTRRQAKYSVHALAAITKDDG
LMSLSVLYKRLVDLLEEKKVNIPSILQSLGCIAQIAMPIFETRKEEIISFITKKILECNDDMVR
NSSNKSEWGDSTENCLLKIYGIKTLVKSYLPCKDAHAQPGIEKLIDILKNILTYGDVSPNMVSS
AADKAHLRLAAAKAVLRLSKQWDHKVPVDVFYLTLRISQIHISILFQDDFPQVRKLFLCKVLQY
IKERALDAKYACTFMFGVNDYHAPPYEEFKYNLTEVVQICQQVKMRQLSVQADMDLLTAYPEYI
ISFLVHALAHDPSSPEIEEHENVNAFGPIYWRLYLILSILLGEEGLQHSVPGMKKDSFTTIISI
FKSIKSSQDVVDGSKTKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQLYTPLHDNQNENS
VENNEQIWLGCEKVLAHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGKIVKLLKSRGERK
IGEKQKAPSSSSVNAENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKDSNQKPLDFSSPK
RKRSISKSRPHSAKGSKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTELLVSPSTRTPVS
KQNKGAKKSNINILSSVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLLKARVNQLYFVWF
IVPTRVSNERKSETLGYSCDIL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b