Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d037377_circ_g.4 |
| ID in PlantcircBase | zma_circ_009032 |
| Alias | zma_circ_0002312 |
| Organism | Zea mays |
| Position | chr6: 123582186-123589081 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d037377 |
| Parent gene annotation |
binding |
| Parent gene strand | - |
| Alternative splicing | Zm00001d037377_circ_g.1 Zm00001d037377_circ_g.2 Zm00001d037377_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d037377_T061:17 Zm00001d037377_T034:17 Zm00001d037377_T055:17 Zm00001d037377_T005:10 Zm00001d037377_T059:17 Zm00001d037377_T026:17 Zm00001d037377_T065:17 Zm00001d037377_T031:17 Zm00001d037377_T029:17 Zm00001d037377_T068:17 Zm00001d037377_T073:17 Zm00001d037377_T074:2 Zm00001d037377_T008:17 Zm00001d037377_T006:17 Zm00001d037377_T054:17 Zm00001d037377_T064:17 Zm00001d037377_T010:17 Zm00001d037377_T056:17 Zm00001d037377_T047:17 Zm00001d037377_T069:17 Zm00001d037377_T009:16 Zm00001d037377_T052:5 Zm00001d037377_T011:13 Zm00001d037377_T066:17 Zm00001d037377_T019:17 Zm00001d037377_T012:17 Zm00001d037377_T002:17 Zm00001d037377_T060:17 Zm00001d037377_T036:17 Zm00001d037377_T070:17 Zm00001d037377_T053:17 Zm00001d037377_T007:17 Zm00001d037377_T004:12 Zm00001d037377_T067:17 Zm00001d037377_T076:16 Zm00001d037377_T003:17 Zm00001d037377_T037:17 Zm00001d037377_T063:18 Zm00001d037377_T025:16 Zm00001d037377_T032:14 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.114103031 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
123588622-123582188(+) 123589028-123588982(-) |
| Potential amino acid sequence |
MFKFSSHFAESLNKRDMFRKHPMILFCRSGASSWLSCRSDMYFIISCCSLCFCRRICSRAFIST LSKYVAAVTQCFTLPFIGNSGGNNEPHKIELIDSGL*(+) MKGRVKHWVTAATYFDKVEMKALEQILLQKQRLQQEMMKYISLRQLSQEDAPDLQKRIIGCFRN ISRLFSDSAKCEENLNMLHQLKDADIWKIFTSLLNCSTTFEKAWSLRADLLKIFGEKHVLYNFV GALAMGCSYLLVNKEYAKEILSEASEQKTSGNTKLISSCMNLLTAISSFFPSLLSGLEEDIVEL LKEDNEVLKEGIAHVLSKAGGTIREQLASTSSLDLLLERLCLEGTRRQAKYSVHALAAITKDDG LMSLSVLYKRLVDLLEEKKVNIPSILQSLGCIAQIAMPIFETRKEEIISFITKKILECNDDMVR NSSNKSEWGDSTENCLLKIYGIKTLVKSYLPCKDAHAQPGIEKLIDILKNILTYGDVSPNMVSS AADKAHLRLAAAKAVLRLSKQWDHKVPVDVFYLTLRISQIHISILFQDDFPQVRKLFLCKVLQY IKERALDAKYACTFMFGVNDYHAPPYEEFKYNLTEVVQICQQVKMRQLSVQADMDLLTAYPEYI ISFLVHALAHDPSSPEIEEHENVNAFGPIYWRLYLILSILLGEEGLQHSVPGMKKDSFTTIISI FKSIKSSQDVVDGSKTKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQLYTPLHDNQNENS VENNEQIWLGCEKVLAHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGKIVKLLKSRGERK IGEKQKAPSSSSVNAENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKDSNQKPLDFSSPK RKRSISKSRPHSAKGSKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTELLVSPSTRTPVS KQNKGAKKSNINILSSVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLLKARVNQLYFVWF IVPTRVSNERKSETLGYSCDIL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |