Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037377_circ_g.3 |
ID in PlantcircBase | zma_circ_009031 |
Alias | Zm06circ00053, zma_circ_0002163, GRMZM2G368678_C1 |
Organism | Zea mays |
Position | chr6: 123581593-123583570 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d037377 |
Parent gene annotation |
binding |
Parent gene strand | - |
Alternative splicing | Zm00001d037377_circ_g.1 Zm00001d037377_circ_g.2 Zm00001d037377_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037377_T063:8 Zm00001d037377_T025:6 Zm00001d037377_T008:7 Zm00001d037377_T019:7 Zm00001d037377_T067:7 Zm00001d037377_T009:7 Zm00001d037377_T003:7 Zm00001d037377_T061:7 Zm00001d037377_T073:7 Zm00001d037377_T056:7 Zm00001d037377_T074:3 Zm00001d037377_T011:7 Zm00001d037377_T053:7 Zm00001d037377_T052:7 Zm00001d037377_T031:7 Zm00001d037377_T005:7 Zm00001d037377_T002:7 Zm00001d037377_T010:7 Zm00001d037377_T032:7 Zm00001d037377_T059:7 Zm00001d037377_T006:7 Zm00001d037377_T012:7 Zm00001d037377_T004:7 Zm00001d037377_T068:7 Zm00001d037377_T069:7 Zm00001d037377_T070:7 Zm00001d037377_T034:7 Zm00001d037377_T007:7 Zm00001d037377_T047:7 Zm00001d037377_T060:7 Zm00001d037377_T037:7 Zm00001d037377_T054:7 Zm00001d037377_T055:7 Zm00001d037377_T065:7 Zm00001d037377_T029:7 Zm00001d037377_T064:6 Zm00001d037377_T076:4 Zm00001d037377_T036:7 Zm00001d037377_T066:7 Zm00001d037377_T026:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.299421631 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
123583506-123581610(+) 123583508-123583519(-) 123581641-123583519(-) |
Potential amino acid sequence |
MPGTLCCKPSSPRRIERIRYSRPMFFLG*(+) MKKDSFTTIISIFKSIKSSQDVVDGSKTKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQL YTPLHDNQNENSVENNEQIWLGCEKVLAHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGK IVKLLKSRGERKIGEKQKAPSSSSVNAENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKD SNQKPLDFSSPKRKRSISKSRPHSAKGSKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTE LLVSPSTRTPVSKQNKGAKKSNINILSSVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLL KCSTQDSSSTDLVGHRIKVWWPLDKRFYEGAVQSYDSSKKKHRATISDSFNPPGGRRFAT*(-) MKVPCNHTIHPRKNIGRLYLILSILLGEEGLQHSVPGMKKDSFTTIISIFKSIKSSQDVVDGSK TKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQLYTPLHDNQNENSVENNEQIWLGCEKVL AHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGKIVKLLKSRGERKIGEKQKAPSSSSVNA ENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKDSNQKPLDFSSPKRKRSISKSRPHSAKG SKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTELLVSPSTRTPVSKQNKGAKKSNINILS SVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLLKCSTQDSSSTDLVGHRIKVWWPLDKRF YEGAVQSYDSSKKKHRATISDSFNPPGGRRFAT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |