Detail information of Zm00001d037377_circ_g.3


General Information
CircRNA Name Zm00001d037377_circ_g.3
ID in PlantcircBase zma_circ_009031
Alias Zm06circ00053, zma_circ_0002163, GRMZM2G368678_C1
Organism Zea mays
Position chr6: 123581593-123583570  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d037377
Parent gene annotation binding
Parent gene strand -
Alternative splicing Zm00001d037377_circ_g.1 Zm00001d037377_circ_g.2 Zm00001d037377_circ_g.4
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d037377_T063:8
Zm00001d037377_T025:6
Zm00001d037377_T008:7
Zm00001d037377_T019:7
Zm00001d037377_T067:7
Zm00001d037377_T009:7
Zm00001d037377_T003:7
Zm00001d037377_T061:7
Zm00001d037377_T073:7
Zm00001d037377_T056:7
Zm00001d037377_T074:3
Zm00001d037377_T011:7
Zm00001d037377_T053:7
Zm00001d037377_T052:7
Zm00001d037377_T031:7
Zm00001d037377_T005:7
Zm00001d037377_T002:7
Zm00001d037377_T010:7
Zm00001d037377_T032:7
Zm00001d037377_T059:7
Zm00001d037377_T006:7
Zm00001d037377_T012:7
Zm00001d037377_T004:7
Zm00001d037377_T068:7
Zm00001d037377_T069:7
Zm00001d037377_T070:7
Zm00001d037377_T034:7
Zm00001d037377_T007:7
Zm00001d037377_T047:7
Zm00001d037377_T060:7
Zm00001d037377_T037:7
Zm00001d037377_T054:7
Zm00001d037377_T055:7
Zm00001d037377_T065:7
Zm00001d037377_T029:7
Zm00001d037377_T064:6
Zm00001d037377_T076:4
Zm00001d037377_T036:7
Zm00001d037377_T066:7
Zm00001d037377_T026:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAGATATTATTGTAGTGAAGCTGTCCTTTTTCATGCCTGGGACACTATGTTGCAAACCTTCT
TCCCCCAGGAGGATTGAAAGAATCAGATATAGTCGCcctatgttttttcttggatgaatcgtat
gattgcacggcaccttcataaaatctaatgacaaaaaacttaaaatcaacaccacattcaggaa
taaactaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1153
Transcript exons: 123581593-123581644,123581742-123581815,123582186-123582
287,123582379-123582927,123583021-123583101,123583183-12
3583326,123583420-123583570
CCTATGTTTTTTCTTGGATGAATCGTATGATTGCACGGCACCTTCATAAAATCTCTTATCCAAA
GGCCACCAAACTTTTATTCGGTGTCCTACCAAGTCTGTACTGCTTGAGTCTTGTGTTGAGCACT
TTAGTAAACCAGAAATTGGTTTTGACTTTTGCCTTTTGAGTGACCCATTTAGACTTCTCGGTTC
AACAGTTCTCTTAGTACTGTCTGCATCAGCAGACTTCTTTGGAACACTGCTCAAAATATTAATA
TTGGATTTCTTAGCACCCTTATTTTGTTTAGATACAGGGGTTCTAGTGCTTGGAGATACTAACA
GTTCTGTATCAGTTGAATCATCTCTGTCTTTCTCCTTCATCTTAGTTTCCAAGGAGATATTGGT
CCTCTCTGAGTTAGGAGTATGTAGTAGACGCTCATCACTGCTTTTACTACCTTTTGCTGAATGT
GGTCTACTCTTAGAAATTGATCTTTTGCGTTTAGGTGAAGAAAAATCAAGTGGTTTCTGGTTAC
TATCTTTTGCATTTGTATGACGCTTCTCAGACTTGTCCTTATGCGATTCCTCCAAATCTTCTTG
ATTGTTTAAGTTAATTTCTCTTACTAAACCCAGAACATCATCGTTCTCTGCATTTACTGAACTA
CTAGATGGTGCCTTCTGCTTTTCCCCAATCTTCCTTTCTCCTCGTGATTTAAGAAGTTTGACAA
TTTTGCCAAGAGGAACTTCATTTCCAAATTCATCAGTCACATCAATAAGCATCTTATGTTTGGG
AGATTCAACCTTATCCATATTTGCAGTCCTTACAGCCTCAAAATGGGCCAGTACTTTCTCACAT
CCCAGCCAAATCTGCTCATTATTCTCCACAGAATTTTCATTTTGGTTATCATGAAGCGGCGTGT
AAAGTTGAGCAGGCAATGGAACTGTTTGAGCTTCTGATAAACTCGTTTGGTCTTGGCATAACCT
CTTTGCAATAAGAGTACCAAGATCACATATAGCACACACAGTCTTGGTCTTACTTCCATCAACC
ACATCCTGTGAAGATTTTATACTTTTGAATATAGATATTATTGTAGTGAAGCTGTCCTTTTTCA
TGCCTGGGACACTATGTTGCAAACCTTCTTCCCCCAGGAGGATTGAAAGAATCAGATATAGTCG
C

Genomic sequence CCTATGTTTTTTCTTGGATGAATCGTATGATTGCACGGCACCTTCATAAAATCTAATGACAAAA
AACTTAAAATCAACACCACATTCAGGAATAAACTAATTTCAATAACATAAGTACAGATAACAAT
AACATTTACTAGACAACATACCTCTTATCCAAAGGCCACCAAACTTTTATTCGGTGTCCTACCA
AGTCTGTACTGCTTGAGTCTTGTGTTGAGCACTGCCCGCATAAACACATTCTTAGCAGCCACAA
GACAATAGAAGAAAAAATGCTTGCACAAATTTGAATATTGCCAAGAATATATATATATATATAT
ATATAACAAATTTGAAGGGCGGGTCTGGTGTACCGGTAGAGCCTACAATATGTAACCGAAAGGT
CCCAGGTTGGAGCCCCAGCCTCCGCATATTATGCGGGTAAGGCTTGGCGCTTAAAGATACCCTT
CCCCAGACCCCGCACAGTGCGGGAAGCCTACGGCACTGGGTACACCCTTTTTTTATATGTGCTT
CCTTCCAATGATAGGCATGATTTGCACAAAAGTTGTAGCTAACACAATTGGCTTATAATATAGA
ACAGAATTAATCATTACCTTTAGTAAACCAGAAATTGGTTTTGACTTTTGCCTTTTGAGTGACC
CATTTAGACTTCTCGGTTCAACAGTTCTCTTAGTACTGTCTGCATCAGCAGACTTCTGAAAAGG
TTGAATAAGAATTGAAACAATCATAAACTAGAACTCAAAAGTTTTATTGATACATAGATACCAT
AGAGATGGAAGAAGTCACCTTTGGAACACTGCTCAAAATATTAATATTGGATTTCTTAGCACCC
TTATTTTGTTTAGATACAGGGGTTCTAGTGCTTGGAGATACTAACAGTTCTGTATCAGTTGAAT
CATCTCTGTCTTTCTCCTTCATCTTAGTTTCCAAGGAGATATTGGTCCTCTCTGAGTTAGGAGT
ATGTAGTAGACGCTCATCACTGCTTTTACTACCTTTTGCTGAATGTGGTCTACTCTTAGAAATT
GATCTTTTGCGTTTAGGTGAAGAAAAATCAAGTGGTTTCTGGTTACTATCTTTTGCATTTGTAT
GACGCTTCTCAGACTTGTCCTTATGCGATTCCTCCAAATCTTCTTGATTGTTTAAGTTAATTTC
TCTTACTAAACCCAGAACATCATCGTTCTCTGCATTTACTGAACTACTAGATGGTGCCTTCTGC
TTTTCCCCAATCTTCCTTTCTCCTCGTGATTTAAGAAGTTTGACAATTTTGCCAAGAGGAACTT
CATTTCCAAATTCATCAGTCACATCAATAAGCATCTTATGTTTGGGAGATTCAACCTGGAAATA
CATTAAAAAACAAAATAGTGTAGTTGATACAACAGATAAAGAAAGCTGAGCAACAATATTAACA
ACCTATTATGCATCAAATACCTTATCCATATTTGCAGTCCTTACAGCCTCAAAATGGGCCAGTA
CTTTCTCACATCCCAGCCAAATCTGCTCATTATTCTCCTGCACAATATTACACAATATCAATAC
CACAAACTTTATGAACTATCAAGCAGTTATCTCATGCTTTGTTGGAGCACACACCACAGAATTT
TCATTTTGGTTATCATGAAGCGGCGTGTAAAGTTGAGCAGGCAATGGAACTGTTTGAGCTTCTG
ATAAACTCGTTTGGTCTTGGCATAACCTCTTTGCAATAAGAGTACCAAGATCACATATAGCACA
CACAGTCTGCAAACAGCATATCAAACATCAGGTCGCACTTAGTAGCAACACATGTACAGCAACC
CAAATGAAGAGAAAGTACAATCAAACACATTTTACCTTGGTCTTACTTCCATCAACCACATCCT
GTGAAGATTTTATACTTTTGAATATAGATATTATTGTAGTGAAGCTGTCCTTTTTCATGCCTGG
GACACTATGTTGCAAACCTTCTTCCCCCAGGAGGATTGAAAGAATCAGATATAGTCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.299421631
Functional Information
Coding potential Y
Potential coding position 123583506-123581610(+)
123583508-123583519(-)
123581641-123583519(-)
Potential amino acid sequence MPGTLCCKPSSPRRIERIRYSRPMFFLG*(+)
MKKDSFTTIISIFKSIKSSQDVVDGSKTKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQL
YTPLHDNQNENSVENNEQIWLGCEKVLAHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGK
IVKLLKSRGERKIGEKQKAPSSSSVNAENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKD
SNQKPLDFSSPKRKRSISKSRPHSAKGSKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTE
LLVSPSTRTPVSKQNKGAKKSNINILSSVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLL
KCSTQDSSSTDLVGHRIKVWWPLDKRFYEGAVQSYDSSKKKHRATISDSFNPPGGRRFAT*(-)
MKVPCNHTIHPRKNIGRLYLILSILLGEEGLQHSVPGMKKDSFTTIISIFKSIKSSQDVVDGSK
TKTVCAICDLGTLIAKRLCQDQTSLSEAQTVPLPAQLYTPLHDNQNENSVENNEQIWLGCEKVL
AHFEAVRTANMDKVESPKHKMLIDVTDEFGNEVPLGKIVKLLKSRGERKIGEKQKAPSSSSVNA
ENDDVLGLVREINLNNQEDLEESHKDKSEKRHTNAKDSNQKPLDFSSPKRKRSISKSRPHSAKG
SKSSDERLLHTPNSERTNISLETKMKEKDRDDSTDTELLVSPSTRTPVSKQNKGAKKSNINILS
SVPKKSADADSTKRTVEPRSLNGSLKRQKSKPISGLLKCSTQDSSSTDLVGHRIKVWWPLDKRF
YEGAVQSYDSSKKKHRATISDSFNPPGGRRFAT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA