Detail information of AT2G05920_circ_g.10


General Information
CircRNA Name AT2G05920_circ_g.10
ID in PlantcircBase ath_circ_012943
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2272011-2272133  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ, CIRI-full
Parent gene AT2G05920
Parent gene annotation Subtilisin-like protease SBT1.8
Parent gene strand -
Alternative splicing AT2G05920_circ_g.7 AT2G05920_circ_g.8 AT2G05920_circ_g.9 AT2G05920_circ_g.11
Support reads 8
Tissues root, leaf, aerial, inflorescences
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05920.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGgtt
gtgtaagtgtagagaagagatgattctgaattgagttgagatgtgtaccaatcgtggtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 123
Transcript exons: 2272011-2272133
GTTGTGTAAGTGTAGAGAAGAGATGATTCTGAATTGAGTTGAGATGTGTACCAATCGTGGTGAG
TGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCG

Genomic sequence GTTGTGTAAGTGTAGAGAAGAGATGATTCTGAATTGAGTTGAGATGTGTACCAATCGTGGTGAG
TGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.227550719
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017