Detail information of AT2G05920_circ_g.11


General Information
CircRNA Name AT2G05920_circ_g.11
ID in PlantcircBase ath_circ_012944
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2272011-2272163  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G05920
Parent gene annotation Subtilisin-like protease SBT1.8
Parent gene strand -
Alternative splicing AT2G05920_circ_g.7 AT2G05920_circ_g.8 AT2G05920_circ_g.9 AT2G05920_circ_g.10
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05920.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGGTTGTGTGGAGGAGAAGG
AAGAGGAAGGTGgttgtgtaagtgtagagaagagatgattctgaattgagttgagatgtgtacc
aatcgtggtgagtgaggaatgattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGTGTAAGTGTAGAGAAGAGATGATTCTGAATTGAGTTGAGATGTGTACCAATCGTGGTGAG
TGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGGTTGT
GTGGAGGAGAAGGAAGAGGAAGGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.198802025
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017