Detail information of AT2G05920_circ_g.9


General Information
CircRNA Name AT2G05920_circ_g.9
ID in PlantcircBase ath_circ_012942
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2272008-2272160  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT2G05920
Parent gene annotation Subtilisin-like protease SBT1.8
Parent gene strand -
Alternative splicing AT2G05920_circ_g.7 AT2G05920_circ_g.8 AT2G05920_circ_g.10 AT2G05920_circ_g.11
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05920.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGGTTGTGTGGAGGAGA
AGGAAGAGGAAGgaggttgtgtaagtgtagagaagagatgattctgaattgagttgagatgtgt
accaatcgtggtgagtgaggaatga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 153
Transcript exons: 2272008-2272160
GAGGTTGTGTAAGTGTAGAGAAGAGATGATTCTGAATTGAGTTGAGATGTGTACCAATCGTGGT
GAGTGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGGT
TGTGTGGAGGAGAAGGAAGAGGAAG

Genomic sequence GAGGTTGTGTAAGTGTAGAGAAGAGATGATTCTGAATTGAGTTGAGATGTGTACCAATCGTGGT
GAGTGAGGAATGATTCCGGTTTATCGGAGTGATTGACGCGGATGATGTAGGTTTTTTTGGCGGT
TGTGTGGAGGAGAAGGAAGAGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.196077891
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017