Detail information of AT2G05830_circ_g.5


General Information
CircRNA Name AT2G05830_circ_g.5
ID in PlantcircBase ath_circ_012923
Alias 2:2230041-2230610
Organism Arabidpsis thaliana
Position chr2: 2230041-2230610  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05830
Parent gene annotation Methylthioribose-1-phosphate isomerase
Parent gene strand +
Alternative splicing AT2G05830_circ_g.1 AT2G05830_circ_g.2 AT2G05830_circ_g.3 AT2G05830_circ_g.4 AT2G05830_circ_g.6 AT2G05830_circ_g.7 AT2G05830_circ_g.8 AT2G05830_circ_g.9 AT2G05830_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05830.4:3
AT2G05830.1:3
AT2G05830.3:3
AT2G05830.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGA
TAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGgagtgctattcaggaaatggttgtacgt
ggtgctcctgctatagctattgctgctgctctttctttggctgttgaagttttcaactttcatg
gttttgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTTCT
TTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGATGGATCAGCTTCAGATGCTGTTGCTTTTC
TTGAGAACAAGTTGGATTATTTAGTGTCAAGGTTAGATTTTGGATTTGTTAGTTAAGTTTTGCA
TCTTTGGTGCTTACTCTAATGTCTTTTGCTTTTTATGTTTGTTTCTTCAGCCGTCCAACAGCAG
TTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTACTGCCAC
CGAAGCCAAATCCATTTTCAAGGTATCAAGAAGTTTCGTAATTCATCTGTGTGTGTGCCTTTTG
CTTTTGTAAGTTTAGCTCATTCTCTGTGCTTGTTGTTCTTCAGGCATATATTGAAGCTAGTGAG
GATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGA
GGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.215569157
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020