Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G05830_circ_g.3 |
ID in PlantcircBase | ath_circ_012921 |
Alias | 2:2230041-2230199 |
Organism | Arabidpsis thaliana |
Position | chr2: 2230041-2230199 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT2G05830 |
Parent gene annotation |
Methylthioribose-1-phosphate isomerase |
Parent gene strand | + |
Alternative splicing | AT2G05830_circ_g.1 AT2G05830_circ_g.2 AT2G05830_circ_g.4 AT2G05830_circ_g.5 AT2G05830_circ_g.6 AT2G05830_circ_g.7 AT2G05830_circ_g.8 AT2G05830_circ_g.9 AT2G05830_circ_g.10 |
Support reads | 1/1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G05830.1:1 AT2G05830.2:1 AT2G05830.3:1 AT2G05830.4:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.315970841 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |