Detail information of AT2G05830_circ_g.2


General Information
CircRNA Name AT2G05830_circ_g.2
ID in PlantcircBase ath_circ_012920
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2229911-2230610  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G05830
Parent gene annotation Methylthioribose-1-phosphate isomerase
Parent gene strand +
Alternative splicing AT2G05830_circ_g.1 AT2G05830_circ_g.3 AT2G05830_circ_g.4 AT2G05830_circ_g.5 AT2G05830_circ_g.6 AT2G05830_circ_g.7 AT2G05830_circ_g.8 AT2G05830_circ_g.9 AT2G05830_circ_g.10
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05830.4:4
AT2G05830.2:4
AT2G05830.1:4
AT2G05830.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGA
TAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGaggaagcttcctttagagactatttact
tagagattcgtgatgcttcagatggatggtaaagtctttacctttatgattagagattgttttg
ggaaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGAAGCTTCCTTTAGAGACTATTTACTTAGAGATTCGTGATGCTTCAGATGGATGGTAAAGTC
TTTACCTTTATGATTAGAGATTGTTTTGGGAAAATTGTGGTTTAAAAAGTTTGATACTTTTGGT
AGGAGTGCTATTCAGGAAATGGTTGTACGTGGTGCTCCTGCTATAGCTATTGCTGCTGCTCTTT
CTTTGGCTGTTGAAGTTTTCAACTTTCATGGTTTTGATGGATCAGCTTCAGATGCTGTTGCTTT
TCTTGAGAACAAGTTGGATTATTTAGTGTCAAGGTTAGATTTTGGATTTGTTAGTTAAGTTTTG
CATCTTTGGTGCTTACTCTAATGTCTTTTGCTTTTTATGTTTGTTTCTTCAGCCGTCCAACAGC
AGTTAATCTTGCAGATGCTGCTTTGAAACTTAAACATGTTATAGCAAAGGCCTTGGCTACTGCC
ACCGAAGCCAAATCCATTTTCAAGGTATCAAGAAGTTTCGTAATTCATCTGTGTGTGTGCCTTT
TGCTTTTGTAAGTTTAGCTCATTCTCTGTGCTTGTTGTTCTTCAGGCATATATTGAAGCTAGTG
AGGATATGCTTGAAGATGATGTTGTTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTT
GAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.202415618
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017