Detail information of BGIOSGA032205_circ_g.3


General Information
CircRNA Name BGIOSGA032205_circ_g.3
ID in PlantcircBase osi_circ_002763
Alias 10:5270579|5271503
Organism Oryza sativa ssp. indica
Position chr10: 5270579-5271503  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032205
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032205_circ_g.1 BGIOSGA032205_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA032205-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCGAAGTCCAGATCCTTTCCACCTTCCTCATCGTCATCCATACTTTTTTTGTTGAGCGCAAG
CCTATTTTTGCGTGCAGCTTCCTCTTCTTCATCCTCctgcttaatttcaggaggagcgggaatc
tcaggagctaaatctgcccgctcctctgggtctatatccacagcctcatcgtcgtcagtgaatg
tttcttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTAATTTCAGGAGGAGCGGGAATCTCAGGAGCTAAATCTGCCCGCTCCTCTGGGTCTATA
TCCACAGCCTCATCGTCGTCAGTGAATGTTTCTTCGTGCTCCCAGTCATCACCTGACAAGGCAA
TTCCCAACAGAGATGTCAATCTCAGACTTCAAAATGCCCAAAAAATATATAGGCATTGTTACTG
TTTTATTCGCGTTGCACAAATTTCAGAATTGATCTTCTGCAAAAGAGCAAATGAAGCCCAATGT
GATGGTGAATTGGGGATGTTATGCATTGTAGCTGAGAATTTGCTAAAAAATATATAAACACAAG
TAACATGTGGAGGTCATCCAATGTAAAGAAGGCCATCAGACAAAAGGAATTACCACAAGCTTAT
GCTTCATGGTGTCTATAGACTCTTAAACAAATTTGATGAGAATGGCCTATAAAAAACATATCGT
ATTTTAAAAGTGTTACTAAATAAGTACTCTGAATCCACAACTGATTTTACATATGTCATGAAAT
CTCACTGGAAGAACCAAATGCATTCCAATTTTTGTCATGAAACCACACTGGCAGTACAAAATGC
ATTTTAAATTTTTAAGTATATTAGGCATTAATAACCTCAAACAACACATTACAGAATATGCCAA
TAACAAATATATATCTCTAAAAAAATTAAACATATGAAATAGAAACTTCAGGCCAAGAAAAAGT
AAAAACATCAAGGTACTATGCAATGGTAGTATAAATACAACTATTAGTTGCGTAGATCAACTGA
AAAAGTATTGTTTTGAAGCAAGATTCAGAAGCACACCTTTTTCAATTTCATCATCCAAATCGAA
GTCCAGATCCTTTCCACCTTCCTCATCGTCATCCATACTTTTTTTGTTGAGCGCAAGCCTATTT
TTGCGTGCAGCTTCCTCTTCTTCATCCTC
Conservation Information
Conserved circRNAs osa_circ_006360*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021