Detail information of BGIOSGA032205_circ_g.1


General Information
CircRNA Name BGIOSGA032205_circ_g.1
ID in PlantcircBase osi_circ_008832
Alias Chr10:6830440_6832145(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5268989-5270694  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA032205
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032205_circ_g.2 BGIOSGA032205_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032205-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGCGGGAATCTCAGGAGCTAAATCTGCCCGCTCCTCTGGGTCTATATCCACAGCCTCATCGT
CGTCAGTGAATGTTTCTTCGTGCTCCCAGTCATCACcctctggacctcgtagtctagacttaaa
tctagataccaaatcttgtgtagtgacaggagcaacagcaagaagaacagtcctgatttcatcc
tctgtgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTGGACCTCGTAGTCTAGACTTAAATCTAGATACCAAATCTTGTGTAGTGACAGGAGCAAC
AGCAAGAAGAACAGTCCTGATTTCATCCTCTGTGACAGGAGATACATTTGCACTAGTTTTTGAT
GCAGCAGTGGCCTTCGATGCAGGTTTTGAGGAAGATGGTGTCTCATCTTTGGCCACTGATGTTT
TTGTATCCTAAAAATAATGAAAGGATTTATCATTTAGAGACTAAATCAAAAGAAGTATTCTTGA
TAATAGTGTGTAAGAACTTACAGATTCCACCTTTGCTTTTTTGGAAGCTGCACCGCCAGATGCT
TTTGAATCATCACCACCACCTGATTTCCTCTTTTGCTTCGATTTGGATGCAGGAGGTGTGCCAC
GAGCATGTCCTGATGGTGTTGGTTTAGCGGGGCTGTTATCTACAGGTTCATCTTTGGGTTGATC
CTTCTGTTTTGGAGCAAGCACTGGAGATGACTCATCCTCCTGCTACATGGAGAAATACAAACAT
AAACTCATCAGGATAATTTTAACATCCTTTCTGGCCAAAGTTTACCCTCCTAATACACTATGGA
AAATACAATATTTAAGTTGAGAGAATAAATTATTACGTCATCATCTTCGTCATCCTCATCGGCA
TCTGACTCATTAAGTCCAGCAGCTTTCCCAAGAAGCTTTTTCAACTCCTTGCCAGACTTGCTCA
GACCACCCTCTTCTTCATTCTCTTCATCATCCTAAAAGAATCCATTGTCACAGAATATTTGTTA
TTCTGATAGGGAACAGTCGGACCTATGAGCAAGAAAAAGTAGCAAATAACAAAAGGGAAGAGGA
AAAGCATATTTGCTTTCAAATAGGTTCACTACATTCATCATATATGGGTAGGTATTCTTCTTGT
TCTAGCGGCATTTTTGCAAGAGGTGAGATCCCACAATAATGAGCTGCAAGCAATACAAAGCCTC
TCTAATCAAAGAACTAGAATAGCTATCGGATACTTCTATTAGCATTGAATGAGAACCTTATAAC
AATGAACAGAAACTTAACACAGCTAAATCCTACTCCCTGCGTTCCAAAATATAAGGATTTCTAG
GTTGTCTAGCAAATACTAAGGTTAGGTCAAAAGATTCCTTTTTTAGCCACTTCAGTTATCAATT
TTCTAATTTTGAATTGCTTAGATTCCGTTTCCAATCATCCAATTGGCTTTGGAATCATTGACAT
GATGGGAATCAGTGCTGGAATGCTTATATTGTGGTACAAAATTCGAATCCTAGAAATCCTTATA
TTTTCAAACAAAGGTTTATGACCATCATAACAAGGTATCCCACTTCTACTTCAGGTCAATTTAT
TTTGTTGACTGCTTTGTCATATTAAATTCAACACAAAAAGTCACATGTGGATTAAAACTGTTAC
ATGAGACATGCATTATCAGGAGGTGTGATATCAGAAACCATATGAATATTTACAAATCAGATAC
TTGTCACATTGCAGTAACAGATGAGATGTCAAAGTGTGCTCATTCAAGGTATTATACGAGAAAG
ACAAACTGTGATAACAGAACTCATAATTATTTTGAAATGAATAATCCTGTCTACCTGCTTAATT
TCAGGAGGAGCGGGAATCTCAGGAGCTAAATCTGCCCGCTCCTCTGGGTCTATATCCACAGCCT
CATCGTCGTCAGTGAATGTTTCTTCGTGCTCCCAGTCATCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021