Detail information of BGIOSGA032205_circ_g.2


General Information
CircRNA Name BGIOSGA032205_circ_g.2
ID in PlantcircBase osi_circ_002762
Alias 10:5269266|5269723
Organism Oryza sativa ssp. indica
Position chr10: 5269266-5269723  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032205
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032205_circ_g.1 BGIOSGA032205_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA032205-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCATCTGACTCATTAAGTCCAGCAGCTTTCCCAAGAAGCTTTTTCAACTCCTTGCCAGACTT
GCTCAGACCACCCTCTTCTTCATTCTCTTCATCATCagattccacctttgcttttttggaagct
gcaccgccagatgcttttgaatcatcaccaccacctgatttcctcttttgcttcgatttggatg
caggaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTCCACCTTTGCTTTTTTGGAAGCTGCACCGCCAGATGCTTTTGAATCATCACCACCACCT
GATTTCCTCTTTTGCTTCGATTTGGATGCAGGAGGTGTGCCACGAGCATGTCCTGATGGTGTTG
GTTTAGCGGGGCTGTTATCTACAGGTTCATCTTTGGGTTGATCCTTCTGTTTTGGAGCAAGCAC
TGGAGATGACTCATCCTCCTGCTACATGGAGAAATACAAACATAAACTCATCAGGATAATTTTA
ACATCCTTTCTGGCCAAAGTTTACCCTCCTAATACACTATGGAAAATACAATATTTAAGTTGAG
AGAATAAATTATTACGTCATCATCTTCGTCATCCTCATCGGCATCTGACTCATTAAGTCCAGCA
GCTTTCCCAAGAAGCTTTTTCAACTCCTTGCCAGACTTGCTCAGACCACCCTCTTCTTCATTCT
CTTCATCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 5269380-5269692(-)
Potential amino acid sequence MLVAHLLHPNRSKRGNQVVVMIQKHLAVQLPKKQRWNLMMKRMKKRVV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021