Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038163_circ_g.43 |
ID in PlantcircBase | zma_circ_000347 |
Alias | NA |
Organism | Zea mays |
Position | chr6: 150034168-150034305 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | Zm00001d038163 |
Parent gene annotation |
pyruvate orthophosphate dikinase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d038163_circ_g.37 Zm00001d038163_circ_g.38 Zm00001d038163_circ_g.39 Zm00001d038163_circ_g.40 Zm00001d038163_circ_g.41 Zm00001d038163_circ_g.42 Zm00001d038163_circ_g.44 Zm00001d038163_circ_g.45 Zm00001d038163_circ_g.46 Zm00001d038163_circ_g.47 Zm00001d038163_circ_g.48 |
Support reads | 2 |
Tissues | shoot |
Exon boundary | No-No |
Splicing signals | GG-CA |
Number of exons covered | Zm00001d038163_T029:1 Zm00001d038163_T010:1 Zm00001d038163_T019:1 Zm00001d038163_T017:1 Zm00001d038163_T025:1 Zm00001d038163_T024:1 Zm00001d038163_T036:1 Zm00001d038163_T013:1 Zm00001d038163_T007:1 Zm00001d038163_T027:1 Zm00001d038163_T012:1 Zm00001d038163_T023:1 Zm00001d038163_T026:1 Zm00001d038163_T004:1 Zm00001d038163_T016:1 Zm00001d038163_T003:1 Zm00001d038163_T008:1 Zm00001d038163_T032:1 Zm00001d038163_T005:1 Zm00001d038163_T021:1 Zm00001d038163_T022:1 Zm00001d038163_T002:1 Zm00001d038163_T033:1 Zm00001d038163_T011:1 Zm00001d038163_T035:1 Zm00001d038163_T009:1 Zm00001d038163_T001:1 Zm00001d038163_T018:1 Zm00001d038163_T031:1 Zm00001d038163_T014:1 Zm00001d038163_T020:1 Zm00001d038163_T030:1 Zm00001d038163_T037:1 Zm00001d038163_T015:1 Zm00001d038163_T034:1 Zm00001d038163_T006:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.088768116 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |