Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d038163_circ_g.44 |
ID in PlantcircBase | zma_circ_005291 |
Alias | control_test_circ_004744 |
Organism | Zea mays |
Position | chr6: 150034169-150034446 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038163 |
Parent gene annotation |
pyruvate orthophosphate dikinase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d038163_circ_g.37 Zm00001d038163_circ_g.38 Zm00001d038163_circ_g.39 Zm00001d038163_circ_g.40 Zm00001d038163_circ_g.41 Zm00001d038163_circ_g.42 Zm00001d038163_circ_g.43 Zm00001d038163_circ_g.45 Zm00001d038163_circ_g.46 Zm00001d038163_circ_g.47 Zm00001d038163_circ_g.48 |
Support reads | NA |
Tissues | seedling |
Exon boundary | Yes-No |
Splicing signals | TT-AG |
Number of exons covered | Zm00001d038163_T030:2 Zm00001d038163_T015:2 Zm00001d038163_T036:2 Zm00001d038163_T010:2 Zm00001d038163_T014:2 Zm00001d038163_T035:2 Zm00001d038163_T019:2 Zm00001d038163_T037:2 Zm00001d038163_T016:2 Zm00001d038163_T031:2 Zm00001d038163_T004:2 Zm00001d038163_T026:2 Zm00001d038163_T017:2 Zm00001d038163_T018:2 Zm00001d038163_T001:2 Zm00001d038163_T005:2 Zm00001d038163_T027:2 Zm00001d038163_T007:2 Zm00001d038163_T002:2 Zm00001d038163_T021:2 Zm00001d038163_T024:2 Zm00001d038163_T029:2 Zm00001d038163_T003:2 Zm00001d038163_T009:2 Zm00001d038163_T023:2 Zm00001d038163_T006:2 Zm00001d038163_T022:2 Zm00001d038163_T034:2 Zm00001d038163_T013:2 Zm00001d038163_T033:2 Zm00001d038163_T032:2 Zm00001d038163_T025:2 Zm00001d038163_T008:2 Zm00001d038163_T020:2 Zm00001d038163_T011:2 Zm00001d038163_T012:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.17729985 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Tang et al., 2018 |