Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d038163_circ_g.40 |
ID in PlantcircBase | zma_circ_002361 |
Alias | circ2021 |
Organism | Zea mays |
Position | chr6: 150033911-150034666 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d038163 |
Parent gene annotation |
pyruvate orthophosphate dikinase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d038163_circ_g.37 Zm00001d038163_circ_g.38 Zm00001d038163_circ_g.39 Zm00001d038163_circ_g.41 Zm00001d038163_circ_g.42 Zm00001d038163_circ_g.43 Zm00001d038163_circ_g.44 Zm00001d038163_circ_g.45 Zm00001d038163_circ_g.46 Zm00001d038163_circ_g.47 Zm00001d038163_circ_g.48 |
Support reads | 4 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d038163_T008:4 Zm00001d038163_T035:4 Zm00001d038163_T009:4 Zm00001d038163_T001:4 Zm00001d038163_T024:4 Zm00001d038163_T006:4 Zm00001d038163_T027:4 Zm00001d038163_T016:4 Zm00001d038163_T010:4 Zm00001d038163_T031:4 Zm00001d038163_T034:4 Zm00001d038163_T019:4 Zm00001d038163_T026:4 Zm00001d038163_T014:4 Zm00001d038163_T029:4 Zm00001d038163_T022:4 Zm00001d038163_T037:4 Zm00001d038163_T007:4 Zm00001d038163_T002:4 Zm00001d038163_T017:4 Zm00001d038163_T036:4 Zm00001d038163_T020:4 Zm00001d038163_T023:4 Zm00001d038163_T012:4 Zm00001d038163_T011:4 Zm00001d038163_T004:4 Zm00001d038163_T005:4 Zm00001d038163_T025:4 Zm00001d038163_T033:4 Zm00001d038163_T013:4 Zm00001d038163_T032:4 Zm00001d038163_T003:4 Zm00001d038163_T015:4 Zm00001d038163_T018:4 Zm00001d038163_T030:4 Zm00001d038163_T021:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.038138757 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |