Detail information of BGIOSGA033127_circ_g.3


General Information
CircRNA Name BGIOSGA033127_circ_g.3
ID in PlantcircBase osi_circ_001103
Alias NA
Organism Oryza sativa ssp. indica
Position chr10: 16550425-16550949  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method DCC
Parent gene BGIOSGA033127
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033127_circ_g.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_igg.1 BGIOSGA033127_circ_g.2 BGIOSGA033127_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered BGIOSGA033127-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACAATGGACACAGCTAGCCAAATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCA
CTCAGGTATGTAATTCTTGTGCTGGTTCTTTGTACCtcattatatttgctttgtaattgttttt
gtaactggactagattatcatatacccttagctttaacggttgaatttattgataactacacat
gaagtgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCATTATATTTGCTTTGTAATTGTTTTTGTAACTGGACTAGATTATCATATACCCTTAGCTTTA
ACGGTTGAATTTATTGATAACTACACATGAAGTGTTTCATATGTATTATTAAACAAATTTTGAA
CAATTTCATTTGTTTTTCTGGCTCATGCAGTCTAGCGGTGTTATGATAACTAGAGTTCTGATGT
AAAATATCCCAGTTCACAAGTTTATCTCAGCCCCACTGCGCTGTTGAAGTCCTGAAACTTGAAT
TTAAGTGTACTTCCCATACATGTAGATGATTCCCCTTTGATGCATGTAGATGATTCCCCTTTGA
TCTTCATACTAAAATCTAATGTTTTCAGATTTGACATGGGTAAAGTATGAATTTATTTATATAT
TCAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACAATGGACACAGCTAGCCA
AATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGGTATGTAATTCTTGTGCT
GGTTCTTTGTACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019