Detail information of Os11g0600700_circ_g.6


General Information
CircRNA Name Os11g0600700_circ_g.6
ID in PlantcircBase osa_circ_009752
Alias NA
Organism Oryza sativa
Position chr11: 23069829-23069952  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0600700
Parent gene annotation Similar to RING domain protein. (Os11t0600700-01);Similar to RIN
G domain protein. (Os11t0600700-02)
Parent gene strand +
Alternative splicing Os11g0600700_circ_g.1 Os11g0600700_circ_g.2 Os11g0600700_circ_g.3 Os11g0600700_circ_g.4 Os11g0600700_circ_g.5
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   TG-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAAGTGCCTTTGAAATTTGAAAATTTAGAACATTTCTAAGTCAATACTGTTGGCTTGCAGgt
aagttatttctgtacttattttgcttaaatttaccagtttgtccatttgattatattgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGTTATTTCTGTACTTATTTTGCTTAAATTTACCAGTTTGTCCATTTGATTATATTGTGTT
CAAGTGCCTTTGAAATTTGAAAATTTAGAACATTTCTAAGTCAATACTGTTGGCTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.197580645
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017