Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0600700_circ_g.2 |
ID in PlantcircBase | osa_circ_009748 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 23066681-23070723 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0600700 |
Parent gene annotation |
Similar to RING domain protein. (Os11t0600700-01);Similar to RIN G domain protein. (Os11t0600700-02) |
Parent gene strand | + |
Alternative splicing | Os11g0600700_circ_g.1 Os11g0600700_circ_g.3 Os11g0600700_circ_g.4 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0600700-02:6 Os11t0600700-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003205 |
PMCS | 0.104941019 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
23070458-23066702(+) 23070670-23066685(+) 23066732-23066710(+) 23066935-23070694(-) |
Potential amino acid sequence |
MLCLSQTMKEMMMLLPCSRSFYFELLDFCCHAISWLGYSVFCIAGDKDRNLILLGN*(+) MLYHGLDIQYFASPATKTGI*(+) MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECRICQE EDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEPDDTIIDIG GDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAALILMALLLLRHALSISDNEGDD DASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEFDSPGELTC*(+) MLSSSWHIRHSAAWMSGSSSPPPSSTVSTVVESDAAATTELFTASDGFSTAPPSFPKPSTFTTT WSPIPNSFSPNKLIPQENQIPVFVAGDAKY*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |