Detail information of Os11g0600700_circ_g.2


General Information
CircRNA Name Os11g0600700_circ_g.2
ID in PlantcircBase osa_circ_009748
Alias NA
Organism Oryza sativa
Position chr11: 23066681-23070723  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0600700
Parent gene annotation Similar to RING domain protein. (Os11t0600700-01);Similar to RIN
G domain protein. (Os11t0600700-02)
Parent gene strand +
Alternative splicing Os11g0600700_circ_g.1 Os11g0600700_circ_g.3 Os11g0600700_circ_g.4 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0600700-02:6
Os11t0600700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCCAACAGCTCTTTCTACTTCGAGCTGCTGGATTTCTGCTGCCATGCTATATCATGGCTTGG
ATATTCAGTATTTTGCATCGCCGGCGACAAAGACAGgaatttgattctcctggggaattaactt
gttaggagaaaaggaatttgggatgggcgaccatgtggtggtgaatgtggaaggcttgggaaac
gatggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATTTGATTCTCCTGGGGAATTAACTTGTTAGGAGAAAAGGAATTTGGGATGGGCGACCATGT
GGTGGTGAATGTGGAAGGCTTGGGAAACGATGGAGGGGCTGTGGAGAAGCCATCTGAGGCCGTG
AACAGCTCAGTGGTGGCTGCTGCGTCGCTTTCTACGACTGTTGATACGGTCGAGGAGGGCGGTG
GAGAGGAGGAGCCGCTCATCCAGGCGGCGGAGTGCCGTATATGCCAGGAGGAGGATAGCATCAA
GAACCTCGAGAAGCCTTGTGCTTGCAGTGGCAGCCTCAAGGTCCAGCTCCTCCTCTTTTGATGT
TATTTCCATCTTGGATATGGTTCTTATGTTCCTGAAATTATTGTAGGCAGCTTGTTGTTCATGC
AGTGCATGTAGTTACTGGGGCTAAGAATAGGCTAGTTGGGGTAGTGCTTTTCCTAGTTTCCATT
TTGGCTTCATTATGGTTTTTCAATTCTATTTTCATGTTGGATAAGTTGATGGTTTTCTTGCACA
TAAATTGATCTACCATGTTAGATAAAGTTGATTTATCACATTAGATTCCCTGATAGGTTATACT
ACCTCCATTTCAGGTTATAAGACTTTCTAGTATTGCCTACATTCATATAAATGTTAATGAATCT
AGGCACACATATATGTCTAGATTCATTAACATATATATATATATATATATATATATATATATAT
ATATATATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGAAGTAGT
TGTTTAATTGCCTTGTATATGTATGTTCAGGATAGTATCACTGCCATATCATATGATGGGGATA
AAATTGTTCACCCCTATGGCAGCATAGTTTACTGGGATGCTATCTATCTACCTGTAGAGGATGC
TAACCTTTAAACATGCTGTGTACAAAAAAATTGGTTTATCCAATAACTATGCAGTATCGGGCAT
GGCATGTATGTACCTTTAAGCATGCTCGTGTGACTGTGTCCTCACTTTCTCCTGAATCTAGCTG
CAAATGGCAAGTTGGATTGTTCTCATATACTTTTTAATGAAGAACCAACCTTTGATCTCATAGG
GAAGTGATGTGGATATGGATATTGCATATCATCTGTTTGTCACAATCCCTTGTGGAGAACACTT
TGCAAAGACAAGTTGAGTCAGCACTCCGTTAAACAAAGCAGCTATGAATTCCATTTTACAATCT
TTATGGGATAAGACATACCAGTGTTTTGTGCAATGGTTTTTGAAGCAATAGTTGGGTCACCACA
TTGCTACTTTATGGTATGATGCTACCTTGGACACTAAATTTCAACAGCAATACAGTGCATGGGC
CGGTCTTACGTCATATTAATTGCCAATGGCAATACGTAATGCAAACCCACACTCAAGCAAGCAA
CCACCAATAGTAAGGCTGTGTTCGGGAGGTGGAATTCCACCTCCCCGCAAGAAAAACATGGTGG
TTTATTAATGTTTAATTAATTAAGTATTAGCTAAAAATAACTTGAAAAATGGATTAATATGATT
TTTAAAGCAACTTCCGTATATAATTTTTTTGTAAAAAATGTACCGTTTATTAGTTTGAAAAGCA
TGCACGTGGAAAATGAGAGAGGTGAGTTGGGAAAGTGAAGAAAAGAACTCAGCCTAAATATATT
GGTTTTGAGTTTGATCCAACAACGAAAAATGCATTTTTATCTCTTAATATTCTATTGGGAGCAT
ATCAAGGGCTACTCAAACCATCTGTCCCCAACTATCTCCATGACTTATCACAGTAATACTTTAT
TGATCTCTTCTGTACCGTCTGCTGGTACTGTTAAGTCTTGAGTTATGTCTTGTTATTTCATTTC
ATTACATTTCTTCCATATTTCTGATAGAAGCTCATGAGATGATTAAAGATCCTTAATAATCTTA
TAATCCATTAACCCAGTCCATTTTGTGTGAAAAACTGGATATTAAATAAGCAAATTTATGAGAT
TCGTTACTACTTTATCTGCTTTGTTTCTTTTAGCTTGGAATTTGCTTTTAAGTCATAGCTATTC
TTTGGATATAATGTGTGTTTGACATGAACTTAGAGGCTGCTTCTGTGTAGTCAACTAACTTATA
ATGTGTGTTGTCCTTGGCTTGTATACCATATGAGAAAGTACTTGTATGTTTTATCTATGTAATT
ATTTTGTATTCTGGAATTGACAATTTTACTTTCTTCATGTACAGTATGCTCATAGAGCTTGTGT
GCAACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGGTCAGTAAGATT
TCTTCTCTACTACTCCATTACTACGCATTGCTTTCTAGTTCTTATCTAGAGGCTAAGATAGCAC
CTATTTTGATATGTGTGCATCCAAATTGCAGTATATTTGTTTCTTCTTAGGACTTCATTTGTCA
AATGTTCTGATCTGACCTTGACCTGATGATTTGACTTGTTCTTTCTGCAATCTCACGTCCTCAC
CAATACAATATTGCTGTTGCGATAGCTGAATTCCTCTTTAATGCCATATGCACCTTTTTCTTGA
TGTGTGCTGCTTGCTCTTCTTCTTTCACATAGGCCTCACTCCATACAGGATCATGGCTTTTGTG
TGACAACCTTGAACTCATTTAGTGTTGTCTATCTGCCATTACACCGTTACCATTTGAAGTTGCT
TGGGGAGCGAGAGCTAAAGCAGCTCATTTTTATTTTAATCAATATTAGTTGATTTGAAGTAATC
TGAGTGACGGGGACAGGTCGTGATAAATTGGGTAGATTTGAGTTTTTCCATGGGTGCTTAGTTG
TGGCCTTCCAATTTAGTATTAGTTCGATCTTTTCCTTTCCTTTCATGAGCTTAAAACCAGCATT
TAGTTTTAGGAGAATGTAGGGGAGACCGGGAGAGCCCTACTATGCTGGTACATTGCATGCTTTT
GTGATTGATTAACTGTTTATGTTTCAAATATGTTTATACTCGTAGAATACCTGTAGCTTCTTTC
AGTCTTCTGTAGATTTTCCAATGTGTTTCCGTTCCTGTGTATTAATTTCGTTGAGGCTTGTATT
TTCTTCTGCAGCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCAT
CATAGATATCGGGTAAGTTATTTCTGTACTTATTTTGCTTAAATTTACCAGTTTGTCCATTTGA
TTATATTGTGTTCAAGTGCCTTTGAAATTTGAAAATTTAGAACATTTCTAAGTCAATACTGTTG
GCTTGCAGTGGTGATTGGGCACGTGACCCAAGAATTATTGCTGTAGCGGCTGCACAACGTCGTC
TTCTTGAAACTGAGTATGATGAATATGCTGGTACTGATGCTAGTGGTGCTGCATTCTGCCGTTC
TGCTGCACTTATAGTAAGTACTAAACAACAATTCAAGGTCCTGTTGTGCTTAATAAGCTAAGCT
AATTCATAGATTGCTACTTCCAGAGTCCAGACAATTTGTCCAGTCACCAGTATAGCCTATCGCC
CTATCGATCTGTTTTATAATTGAAGAACCATGCTTAGAGATACCTTGCATTTCTCTCATAGTTC
TGTTTAATGAATGGAAGTATAATATTTTTAGTTGGTTTACAAATAGGCAATCAAGCTAGCCTCC
TTCTCTAGTCAATCCTTTGTATGACTTCTCTAGCCAAATGGCTTGTCTCGAATTTCTGGAATTC
TCAAGATTGAACATTCTAAAATCCTTGGTGCTTTTCCAGCTAATGGCCTTGTTGCTATTGAGGC
ATGCTTTGTCTATCTCAGACAATGAAGGAGATGATGATGCTTCTACCATGTTCTCGGTTAGTCT
TGTGTTCCTTCCCCACTTTTTTTATCTTATTGGTTCTTTCTGAGCTCAATGTTGACTTAAAAAT
CTTTTTTTACATGACTTAAAATCTATTAATGTTCTTCAATGTCCAACAGCTCTTTCTACTTCGA
GCTGCTGGATTTCTGCTGCCATGCTATATCATGGCTTGGATATTCAGTATTTTGCATCGCCGGC
GACAAAGACAG
Conservation Information
Conserved circRNAs osi_circ_003205
PMCS 0.104941019
Functional Information
Coding potential Y
Potential coding position 23070458-23066702(+)
23070670-23066685(+)
23066732-23066710(+)
23066935-23070694(-)
Potential amino acid sequence MLCLSQTMKEMMMLLPCSRSFYFELLDFCCHAISWLGYSVFCIAGDKDRNLILLGN*(+)
MLYHGLDIQYFASPATKTGI*(+)
MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECRICQE
EDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEPDDTIIDIG
GDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAALILMALLLLRHALSISDNEGDD
DASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEFDSPGELTC*(+)
MLSSSWHIRHSAAWMSGSSSPPPSSTVSTVVESDAAATTELFTASDGFSTAPPSFPKPSTFTTT
WSPIPNSFSPNKLIPQENQIPVFVAGDAKY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017