Detail information of Os01g0512100_circ_g.1


General Information
CircRNA Name Os01g0512100_circ_g.1
ID in PlantcircBase osa_circ_001903
Alias Os_ciR5790
Organism Oryza sativa
Position chr1: 18043256-18044744  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0512100
Parent gene annotation Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T
O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
Parent gene strand +
Alternative splicing Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0512100-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGGATATTATTTAATTCTCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAA
CAAGAAATTAATGGAGGTTATGGACTAGCTCTTCAGgtatcaccctgacaagaatgctagtaac
ccagaagcatcagaactcttcaaagaggttgcatattcatatagtatcttgtcagatcctgaga
aacggagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 114
Transcript exons: 18043256-18043338,18044714-18044744
GTATCACCCTGACAAGAATGCTAGTAACCCAGAAGCATCAGAACTCTTCAAAGAGGTTGCATAT
TCATATAGTATCTTGTCAGAATTAATGGAGGTTATGGACTAGCTCTTCAG

Transcript length: 475
Transcript exons: 18043256-18043379,18044120-18044202,18044292-18044403,18
044475-18044579,18044694-18044744
GTATCACCCTGACAAGAATGCTAGTAACCCAGAAGCATCAGAACTCTTCAAAGAGGTTGCATAT
TCATATAGTATCTTGTCAGATCCTGAGAAACGGAGGCAATATGATACTGCTGGTTTTGAGGCAT
TGGAGAATGAAGGAATGGATATGGAAATTGACTTATCTAATCTTGGAACTGTGAACACAATGTT
TGCTGCACTTTTCAGCAAGCTCGGTGTTCCAATCAAGACCACAGTATCTCCTAATGTTCTTGAA
GAAGCTATGAGTGGAACAGTTACAGTGAGACCTCTCCCAGTTGGATCATCAGCAACGGGAAAGG
TTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAGGCAT
TGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGCTGCTTTTCTTTGAACAAGAAATT
AATGGAGGTTATGGACTAGCTCTTCAG

Genomic sequence GTATCACCCTGACAAGAATGCTAGTAACCCAGAAGCATCAGAACTCTTCAAAGAGGTTGCATAT
TCATATAGTATCTTGTCAGATCCTGAGAAACGGAGGCAATATGATACTGCTGGTTTTGAGGTGC
TATTCTCATAATCTCATGCTGACTACCAGACTATTTTCGAACAGTTTTTTTTGTGTGTATTTTG
CTTTTACTCCAATGGTTCTGCATTCTTCTCCTTTTCTGATCAATCAATAAGGAGAAGTTTGGCT
GGGATAAATGACCAGCAAGGTGATTTTTGGTGGTGCTGCACCGACATGTATCATACTGTTGCTG
TGTATTTATTAGACCATGTGATAACTGATGAGATTTTTGGATGCTTATTTATCTCCAATCCTTT
CTTCTGTTGCAATGAAGATTAGCTAAGGCAGCTTGGTATATAACGTCGTAGACTCATAGAGAGA
GATTTAATCCCTGGAATCTGTCAAAGAAGAAATGGAGATTACTCATCTAGCTTGATATTTATTG
TCATAGATAGACAATCCCTGGAAACCACTTAAGAGGTAATGGAGAACCTGTATCCTCTAAACAA
TGACAAACTATTAGAAGCATTTCCACCATGTATAACTATTTTAATTCCAAAACCATTTGACTAA
GTACCTTTGTCATGGATAATATGCTTAAGATGATAATTGTACCAAGTAGCCAAGGGCCACAGCT
TATCCTTTACAAATTTGAACTCAGTGGCATTTTTTTTGGGCACTTCAATTATTTTGGGCGTGTA
GGTTAAGATGTGTTTGCCAAGTTTCACATAGTTGGCAGAAATAATGTAACTTTGTTGGTTTGTA
ATCTAACCATCTGTTGTAATATGCTTTCTTAGGCATTGGAGAATGAAGGAATGGATATGGAAAT
TGACTTATCTAATCTTGGAACTGTGAACACAATGTTTGCTGCACTTTTCAGGTGACTGTAGCAT
CTGTATGAATTGTTTTCTAGAAAGAATCGAGGATCACTAATTGCCTGCTAACTTTCTTACATAT
TATACCATTTAGCAAGCTCGGTGTTCCAATCAAGACCACAGTATCTCCTAATGTTCTTGAAGAA
GCTATGAGTGGAACAGTTACAGTGAGACCTCTCCCAGTTGGATCATCAGCAACGGGAAAGGTTC
TGCCAATACCAGTTTTATGGTCTTGTTTATAATGGGACGGCTACCATATATATTTTTCTATTTA
TAGGTTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAG
GCATTGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGGTATGAGGTTGATTCTTCCT
TCAATTGCTCTGGAATTGAAGCTTTTATGTTCTGCATCTCTTTGAATTTCAGGATATTATTTAA
TTCTCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAACAAGAAATTAATGGAGGTT
ATGGACTAGCTCTTCAG
Conservation Information
Conserved circRNAs osi_circ_009628
PMCS 0.292443586
Functional Information
Coding potential Y
Potential coding position 18044139-18043264(+)
Potential amino acid sequence MDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQS
AHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQVSP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017