Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0512100_circ_g.6 |
ID in PlantcircBase | osa_circ_001907 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 18044475-18048149 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0512100 |
Parent gene annotation |
Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01) |
Parent gene strand | + |
Alternative splicing | Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.3 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0512100-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.124942444 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18047534-18048146(+) 18044497-18048101(-) |
Potential amino acid sequence |
MYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYT IEAMCAKSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAVDKQSAH FYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHF QVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYTIEAMCA KSYEDTTQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAVDKQSAHFYGVTI SEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYRMD STVNALAMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYTIEAMCAKSYEDT TQRLKEIESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEAVDKQSAHFYGVTISEEQAQ SGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQEDSQKTGKVTSAGMYFLHFQVYRMDSTVNAL AMAKDPEAAFFKRLEGLQPCEVSALKSGTHIFAVYGDNFFKPASYTIEAMCAKSYEDTTQRLKE IESKILEKRNDLRQFETEYRKALARFQEVTNRYTQEKEA(+) MSTLLVNRFFFLGVSVGHFLKPR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |