Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0512100_circ_g.3 |
ID in PlantcircBase | osa_circ_040484 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 18044120-18044744 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRI-long |
Parent gene | Os01g0512100 |
Parent gene annotation |
Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01) |
Parent gene strand | + |
Alternative splicing | Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7 |
Support reads | NA |
Tissues | root, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0512100-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009629 |
PMCS | 0.327207947 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18044139-18044741(+) |
Potential amino acid sequence |
MDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQS AHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLG TVNTMFAALFSKLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEE QAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLGTVNTMFAALFS KLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEEQAQSGIVVRVT SAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVS PNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLF FEQEINGGYGLALQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | this study |