Detail information of Os01g0512100_circ_g.3


General Information
CircRNA Name Os01g0512100_circ_g.3
ID in PlantcircBase osa_circ_040484
Alias NA
Organism Oryza sativa
Position chr1: 18044120-18044744  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os01g0512100
Parent gene annotation Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE T
O GRAVITY) (AtARG1) (AtJ15) (AtDjB15). (Os01t0512100-01)
Parent gene strand +
Alternative splicing Os01g0512100_circ_g.1 Os01g0512100_circ_g.2 Os01g0512100_circ_g.4 Os01g0512100_circ_g.5 Os01g0512100_circ_g.6 Os01g0512100_circ_g.7
Support reads NA
Tissues root, leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0512100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGGATATTATTTAATTCTCTCATTTGCCAAATATTTCTCTATAGCTGCTTTTCTTTGAA
CAAGAAATTAATGGAGGTTATGGACTAGCTCTTCAGgcattggagaatgaaggaatggatatgg
aaattgacttatctaatcttggaactgtgaacacaatgtttgctgcacttttcaggtgactgta
gcatctgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 351
Transcript exons: 18044120-18044202,18044292-18044403,18044475-18044579,18
044694-18044744
GCATTGGAGAATGAAGGAATGGATATGGAAATTGACTTATCTAATCTTGGAACTGTGAACACAA
TGTTTGCTGCACTTTTCAGCAAGCTCGGTGTTCCAATCAAGACCACAGTATCTCCTAATGTTCT
TGAAGAAGCTATGAGTGGAACAGTTACAGTGAGACCTCTCCCAGTTGGATCATCAGCAACGGGA
AAGGTTGACAAGCAAAGTGCTCATTTTTATGGTGTAACAATAAGTGAAGAACAAGCTCAGTCAG
GCATTGTAGTCAGAGTCACCTCAGCCGCACAAAGTAAATTTAAGCTGCTTTTCTTTGAACAAGA
AATTAATGGAGGTTATGGACTAGCTCTTCAG

Genomic sequence GCATTGGAGAATGAAGGAATGGATATGGAAATTGACTTATCTAATCTTGGAACTGTGAACACAA
TGTTTGCTGCACTTTTCAGGTGACTGTAGCATCTGTATGAATTGTTTTCTAGAAAGAATCGAGG
ATCACTAATTGCCTGCTAACTTTCTTACATATTATACCATTTAGCAAGCTCGGTGTTCCAATCA
AGACCACAGTATCTCCTAATGTTCTTGAAGAAGCTATGAGTGGAACAGTTACAGTGAGACCTCT
CCCAGTTGGATCATCAGCAACGGGAAAGGTTCTGCCAATACCAGTTTTATGGTCTTGTTTATAA
TGGGACGGCTACCATATATATTTTTCTATTTATAGGTTGACAAGCAAAGTGCTCATTTTTATGG
TGTAACAATAAGTGAAGAACAAGCTCAGTCAGGCATTGTAGTCAGAGTCACCTCAGCCGCACAA
AGTAAATTTAAGGTATGAGGTTGATTCTTCCTTCAATTGCTCTGGAATTGAAGCTTTTATGTTC
TGCATCTCTTTGAATTTCAGGATATTATTTAATTCTCTCATTTGCCAAATATTTCTCTATAGCT
GCTTTTCTTTGAACAAGAAATTAATGGAGGTTATGGACTAGCTCTTCAG
Conservation Information
Conserved circRNAs osi_circ_009629
PMCS 0.327207947
Functional Information
Coding potential Y
Potential coding position 18044139-18044741(+)
Potential amino acid sequence MDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQS
AHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLG
TVNTMFAALFSKLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEE
QAQSGIVVRVTSAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLGTVNTMFAALFS
KLGVPIKTTVSPNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEEQAQSGIVVRVT
SAAQSKFKLLFFEQEINGGYGLALQALENEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVS
PNVLEEAMSGTVTVRPLPVGSSATGKVDKQSAHFYGVTISEEQAQSGIVVRVTSAAQSKFKLLF
FEQEINGGYGLALQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study