Detail information of Zm00001d041070_circ_g.3


General Information
CircRNA Name Zm00001d041070_circ_g.3
ID in PlantcircBase zma_circ_007597
Alias Zm03circ00031, zma_circ_0001096, GRMZM2G319465_C1
Organism Zea mays
Position chr3: 94785721-94790667  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d041070
Parent gene annotation 5-methylthioadenosine/S-adenosylhomocysteine deaminase
Parent gene strand +
Alternative splicing Zm00001d041070_circ_igg.1 Zm00001d041070_circ_igg.2 Zm00001d041070_circ_g.1 Zm00001d041070_circ_g.2 Zm00001d041070_circ_g.4 Zm00001d041070_circ_g.5 Zm00001d041070_circ_g.6 Zm00001d041070_circ_g.7 Zm00001d041070_circ_g.8 Zm00001d041070_circ_g.9
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d041070_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACATTGTCTACTGCATGCGGACAGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGG
ATCATGAAGGATCATAAAATCATGAATCTCAATGAGcatattgcagaaataccatatgaaaatc
aacttatacttcggaccaaaggaattgatcatggcacagtgacatatttagacaaaattgattt
cctgagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATTGCAGAAATACCATATGAAAATCAACTTATACTTCGGACCAAAGGAATTGATCATGGCA
CAGTGACATATTTAGACAAAATTGATTTCCTGAGGAGTAATTTACTGGCTGCCCATTCTGTTTG
GTTGAATGTACCTGAGGTGAGTAAACTTTTTCACAATCAATTGTTGCCTTGCACATTGTCTACT
CTGTTTGTATCCTGAGAACATATAGTAGTTATCAAATATACAAAATAGCCTAGAAAATGTTCTG
GTTCTAAGAATGCCATGGCTTTAGTTTTTATTCTGTCCCAAAATCTAGGTGGGGTGGGGTGGGG
TGGTGGTGGTGGTGGTTAGGTGCTATGGATAGTTTACTGGAAGTCTGGAGGACGAGGTCAATGG
CATCCTGTTGGTGCCATGATTGCAGGAGGAAGATAGTGGGCTCGGTGGATTACAGCAGAGATAG
AAGAACCGAGGATATTGGCAACGAAGAACAAAAATGGTACAAACAAGAAATATACATAGATCAC
GTCCTTGTTCCCCAAAACAGAGCTCCTTATAAAGGTACTCAGGACTAGTAGTACATGGCCTGAA
TCTTCTAGTCTGTGCATGTTACAATTAAATATTTATTCATGCTTTACTTCCAGGACTAGTAGTA
CATGGGCCCAATCTCTTAGGCGGAAGAGTCGCTGAGGGCGCCAACGGCGGCCGTCTTGACGGCG
TCGCCCTTGGTTGACTGTGACGGCGTGGGGGACATGGTGCCAAGTGGAGGGGGAGGAGAGTAGG
TGCAGCGCGGCAGAGGAGGCCAGCGCACAGATGTAGCACGGCAGAGGGCCAGCGCGCTAGGGCA
GCGGAAGAGGGGGGAAGCTGAGGTGAAACCTGGACTCGTGATACCATGAAAGGAGATATGGCTT
GGAGAATAGTAGATTGACTATAGAGGTACAAGGGATGTACAATATATAGGCACACGGATCATCT
AAGGTTTATATAAAGTACCCAACTAATAGAGATCCTTGCCTAATTTATGATCAACTACCATAAA
CACCAAGACACATATTGCATGCCTGATCACCTTAATCTAACACATATGATAGGCCTGATCAGCC
CAATCTAACACATATGGCAGGCCTGATCAGCCCAATCTAACAGATTTTAAAGGAAAGGGGATCT
AATGGAGATGCTATAAGTCCCAACAAAACCAAACTGCTCAGTTCAGCAAAACAAAAACTAACTT
GAATTCTGCTGCACTCACAAACTGATGTGTTTCTTCATATGGAAGGTTATCTCCATGTACATCC
ATTCATCTACATCATGCTGAAATCCTCATGACAGTGCTAAAACATCTATATAAGAAGTTTTTTT
TGCCACAGTTGGATCTGTATCTAAAGTTCTAAATCTCTTTTGTTATATGACATTTTTTTTTGTC
AATACTAGATCGCAAAACACAGCAATTTCTCCAAGTACAACTCATAGGTATGCCCTTCCATGAT
GGTTTCACTATATGATTTTCAAATTGCAGATAGGCTTTTTTTCAAAGGCTGGTGTTAAGGTTTC
TCACTGTCCTGCATCTGCCATGCGTATGTTGGGGTTTGCTCCTATTAGAGAAATGCTGGATTCT
GGTGTTTGTGTCTCCCTTGGTACAGATGGAGCACCGAGCAATAATAGAATGAGCATTGGTATGC
TTCAGAAATCCTCACAGAAAACATTTTTACAAGCATGTGTGAGCTTGGGCCATGATTTAAAGAG
GAATTGTTATGTTCCAGAAGAATATAGATCGGAGAACCTAATTGACTATTCTTACTTTGCTTCA
ACCAAATAATTATCTCATGTTCACTTTATAGAATGATTATATTCTTGTGAAGATATTCAGTATT
TCATTAAAATGTCATCGCTAGAACTTTCGAAACCACATTTATCTGTTTATTTTTGAAAGAAAAT
GGATTAACTCGGCCGGGGAGGGAAAGACCGCCCTCCCGGTATTATGAAAGAAAATGGATTATCA
GGTTGTTATCATGTTATGTAGTTCAGCTGCGCTGTTATGTAAAGAAACGCTGAATCAACTGAAA
AAAAGACATGGGAAAAGATATTTTACTGATTAAATGAGTAAAAATATACTATTTGGGCATCCAT
TTGATCAGGCTTGCTTTCTTTAATCAAATAAACCAATTCTCCTCCTTTTATTTTAAAAAATATG
TCAACCAGTTACTGTTGGAATGGATCACACAATTTACATATGCAATTGAACTTTGTACTTCATC
CTAGGACATACAAACCTTATATCTTTAAAATTTGGGGCTATTGTGTTCTTGCCCCCACTTTGAT
TTCTAATTGTGATTTTGCCCTCACTTTTTTCGGATGAAGTTGAAAGTTTTCCCTACTCTGGAAG
AAAAGTGAGGATAAAATCACAAAATAGGGTAACTTTTCAACTTCATCCGAGAAAAGTGGGGGCA
AAATCACAAAGTTTGAAAAGTAGGGGCAAAATCACAATTGAAAATCGAAATGGGGGCAAGAACA
CAATAGCCCCTTAAAATTTTGATATGCTGTGGTTAATTTTACATTGACTACCTTGGGTTGTACA
GTGGATGAGATGTACTTAGCGTCCCTAATTAACAAAGGTCGTGAGGCATATATCAGTGGAACAA
CAAACCCAACTGCTCTTCCCGCTGAGACGGTGCTGAAGATGGCTACTATTAATGGTGCAAAAGC
AGTTCTGTGGGACAATGAAATAGGTTCGCTGGAGGTTGGCAAAAAGGTGATGCTCTCAGTTGCT
AGTTTGTTCATGTATAGCTCTCAATAACTTTGGTCCATATATTTCAGAGGTTGATAAATCTTAT
TTTCTTCATTGTAAAGCCATTGAAAGTAGCCTAGAGGGGGGGGGGGGTGAATAGGCTACACCTA
AATTTTTCACTAAAAACTTCGAGATAGTGTTAAATTCAAGTTGCACTGGTGCAAACTGGTTCAG
CTGATTTTGTTTAGTTTACAGCTGAACAAGTTTGAACCTGCTCAACTTAGATTAGATAAATAGT
TAAACAAGTGTGACAAAGTAATGAGAGATTTTTGCTTAAGACTTGCCCTAGAGATAATCCACTC
AAATGGGTGACAAATCGATGTGAATTGGTTTCACACGATTTGCACACAATATAATCAAGTATGA
ACTAACCAACAATTTAAAGCGCTTTCCAAGAGCACACCAAGAACACACGATTTAACCCGAGGTT
TGGCAACTACCACAAACGTGTCTTACTCCTCGTTGAGGAGCCCACAAAGGGCCGGGTCTTTTCC
AACCCTAATCCTCCACAAGCCGACCACCAAGGTCAAGGCAATCTCTTCTCAAATTGGCTCAACG
AGCGGGTGATACAAACTTCTTGGGGTCGTCCACAAATTTGGAGACTCCCAAGCAACCTCAATCC
GTCAAGGAACTCAAGGTTCCAAGAGTAACAAATCCGCACAAGATTCGAGTTTGCGATGAGCTCA
AGAGATGAAGAGAATCGAGATGAAAACAACGAGTTAGACCGACTTCACCTCACACTAAGGGTCC
TTCAATCAATTGAAGGAGATGCGATTTTGGATGTGAGAGGTGGATTGAATGCTCTTGTTTGAGA
GTTGGTCAGCCAAGAATTCGTGGAAAGGGCAGAAGTGAATGAAGAGAGAGAGTGTGAGGCTATA
TAAAGGAGCCCCCAAAAGCTGGCAGCCGTTGGGGAAATCTGACTGAAAACCGGTTGAACCGGTT
CTGAAACCGGTTGAACCGGTTTCCACCAGGGTGGATCTCGGTTCACTGGCTGACTGAGCCGGAG
AGTGGACCGGTTCCAAATTCGGCTGAACCGGCCCAAAAATCGGTTGAACCGATTTTCCAACAGT
CTGTACACGACTTTTTCTGACAGGACTGACTGGCAGACTGGCAGGTCAGAAAGTGGCAAAGTGA
ACAGTGCAGAAACCGGTTGAGCCGGTTTTGAGTCCGGTTGAACCGGTTTTTTCAAACTGGCTAA
CAGATTTTTAGAAAACTGAAGAGAACCCTGGGGAAATCTTAGTGGGAAGTAAAAGTGGTTTTTC
CAAGAGCATTCATGATCTAGTAAAATGTTATCTTAGAGGATTCGAAAAGGTTTGGACTGAGCTC
ATCGCATTTACTTACTCAACTATTGCGGATCCCTCTTAATTGAACAACGATTCCTATGACTCAA
GAATTGTAAAAACAAATTGCCGTTGTTCCCTAGCACTTGAAGCACGCTATATAATGTAGAATTT
TAATCCGCTGTGCTTTTTCATTTGCGTACATATATGCTCTGTGCTTCTCCTGTCTGTAGAATAA
CTGTATACATACTAGGAGAAAACTTGTTAGAATCTCTGTTTGTTTTGTCATTTAATCACCAAAA
CCCTCAGTTAGGGTTGATTGCACTTACAACCATGTTTTTTTGGTTGTACTTTTTTTTGAAGTCA
GTAGTGGGTTGATCAGCTTACTTATCCTATCAAGCTCAAATTCATTTTGACTCTTAAATTATAT
TATATGGTTTAGTTGGCCCATGCAAAGTATCTTGTTTGTGTAGGCGGACTTGGTGGTGGTGAAT
CCATTTACATGGTCCATGGTCCCCTTACATGACAGGTGTGCATTACTATGATTTATTTATTTCT
TAAATGTTTGAATAACTACTATTTTTATGATTGGGTTAGCGCTGTTTTTTTTGCGTCAATGTTT
ACACTCTCGTACTTTTTTTGTGTCTACTCCATTTCACAATTTCTGTATGTAGCCTGTTAATCTT
GTTGTTACCTGATATATATCTAGTTAGTTATCTAGCCGTGCTTTTGGGCCTTTGTTTCATTGGT
TGTTTGGCATAACACTTACCTCTCCGGCTCTCCCTAATGCACAGCATTGCCAACATTGTCTACT
GCATGCGGACAGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGGATCATGAAGGATCATAA
AATCATGAATCTCAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.077007144
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress