Detail information of Zm00001d041070_circ_g.5


General Information
CircRNA Name Zm00001d041070_circ_g.5
ID in PlantcircBase zma_circ_007599
Alias zma_circ_0001513
Organism Zea mays
Position chr3: 94785731-94790667  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d041070
Parent gene annotation 5-methylthioadenosine/S-adenosylhomocysteine deaminase
Parent gene strand +
Alternative splicing Zm00001d041070_circ_igg.1 Zm00001d041070_circ_igg.2 Zm00001d041070_circ_g.1 Zm00001d041070_circ_g.2 Zm00001d041070_circ_g.3 Zm00001d041070_circ_g.4 Zm00001d041070_circ_g.6 Zm00001d041070_circ_g.7 Zm00001d041070_circ_g.8 Zm00001d041070_circ_g.9
Support reads NA
Tissues leaf, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d041070_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACATTGTCTACTGCATGCGGACAGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGG
ATCATGAAGGATCATAAAATCATGAATCTCAATGAGaaataccatatgaaaatcaacttatact
tcggaccaaaggaattgatcatggcacagtgacatatttagacaaaattgatttcctgaggagt
aatttact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATACCATATGAAAATCAACTTATACTTCGGACCAAAGGAATTGATCATGGCACAGTGACATA
TTTAGACAAAATTGATTTCCTGAGGAGTAATTTACTGGCTGCCCATTCTGTTTGGTTGAATGTA
CCTGAGGTGAGTAAACTTTTTCACAATCAATTGTTGCCTTGCACATTGTCTACTCTGTTTGTAT
CCTGAGAACATATAGTAGTTATCAAATATACAAAATAGCCTAGAAAATGTTCTGGTTCTAAGAA
TGCCATGGCTTTAGTTTTTATTCTGTCCCAAAATCTAGGTGGGGTGGGGTGGGGTGGTGGTGGT
GGTGGTTAGGTGCTATGGATAGTTTACTGGAAGTCTGGAGGACGAGGTCAATGGCATCCTGTTG
GTGCCATGATTGCAGGAGGAAGATAGTGGGCTCGGTGGATTACAGCAGAGATAGAAGAACCGAG
GATATTGGCAACGAAGAACAAAAATGGTACAAACAAGAAATATACATAGATCACGTCCTTGTTC
CCCAAAACAGAGCTCCTTATAAAGGTACTCAGGACTAGTAGTACATGGCCTGAATCTTCTAGTC
TGTGCATGTTACAATTAAATATTTATTCATGCTTTACTTCCAGGACTAGTAGTACATGGGCCCA
ATCTCTTAGGCGGAAGAGTCGCTGAGGGCGCCAACGGCGGCCGTCTTGACGGCGTCGCCCTTGG
TTGACTGTGACGGCGTGGGGGACATGGTGCCAAGTGGAGGGGGAGGAGAGTAGGTGCAGCGCGG
CAGAGGAGGCCAGCGCACAGATGTAGCACGGCAGAGGGCCAGCGCGCTAGGGCAGCGGAAGAGG
GGGGAAGCTGAGGTGAAACCTGGACTCGTGATACCATGAAAGGAGATATGGCTTGGAGAATAGT
AGATTGACTATAGAGGTACAAGGGATGTACAATATATAGGCACACGGATCATCTAAGGTTTATA
TAAAGTACCCAACTAATAGAGATCCTTGCCTAATTTATGATCAACTACCATAAACACCAAGACA
CATATTGCATGCCTGATCACCTTAATCTAACACATATGATAGGCCTGATCAGCCCAATCTAACA
CATATGGCAGGCCTGATCAGCCCAATCTAACAGATTTTAAAGGAAAGGGGATCTAATGGAGATG
CTATAAGTCCCAACAAAACCAAACTGCTCAGTTCAGCAAAACAAAAACTAACTTGAATTCTGCT
GCACTCACAAACTGATGTGTTTCTTCATATGGAAGGTTATCTCCATGTACATCCATTCATCTAC
ATCATGCTGAAATCCTCATGACAGTGCTAAAACATCTATATAAGAAGTTTTTTTTGCCACAGTT
GGATCTGTATCTAAAGTTCTAAATCTCTTTTGTTATATGACATTTTTTTTTGTCAATACTAGAT
CGCAAAACACAGCAATTTCTCCAAGTACAACTCATAGGTATGCCCTTCCATGATGGTTTCACTA
TATGATTTTCAAATTGCAGATAGGCTTTTTTTCAAAGGCTGGTGTTAAGGTTTCTCACTGTCCT
GCATCTGCCATGCGTATGTTGGGGTTTGCTCCTATTAGAGAAATGCTGGATTCTGGTGTTTGTG
TCTCCCTTGGTACAGATGGAGCACCGAGCAATAATAGAATGAGCATTGGTATGCTTCAGAAATC
CTCACAGAAAACATTTTTACAAGCATGTGTGAGCTTGGGCCATGATTTAAAGAGGAATTGTTAT
GTTCCAGAAGAATATAGATCGGAGAACCTAATTGACTATTCTTACTTTGCTTCAACCAAATAAT
TATCTCATGTTCACTTTATAGAATGATTATATTCTTGTGAAGATATTCAGTATTTCATTAAAAT
GTCATCGCTAGAACTTTCGAAACCACATTTATCTGTTTATTTTTGAAAGAAAATGGATTAACTC
GGCCGGGGAGGGAAAGACCGCCCTCCCGGTATTATGAAAGAAAATGGATTATCAGGTTGTTATC
ATGTTATGTAGTTCAGCTGCGCTGTTATGTAAAGAAACGCTGAATCAACTGAAAAAAAGACATG
GGAAAAGATATTTTACTGATTAAATGAGTAAAAATATACTATTTGGGCATCCATTTGATCAGGC
TTGCTTTCTTTAATCAAATAAACCAATTCTCCTCCTTTTATTTTAAAAAATATGTCAACCAGTT
ACTGTTGGAATGGATCACACAATTTACATATGCAATTGAACTTTGTACTTCATCCTAGGACATA
CAAACCTTATATCTTTAAAATTTGGGGCTATTGTGTTCTTGCCCCCACTTTGATTTCTAATTGT
GATTTTGCCCTCACTTTTTTCGGATGAAGTTGAAAGTTTTCCCTACTCTGGAAGAAAAGTGAGG
ATAAAATCACAAAATAGGGTAACTTTTCAACTTCATCCGAGAAAAGTGGGGGCAAAATCACAAA
GTTTGAAAAGTAGGGGCAAAATCACAATTGAAAATCGAAATGGGGGCAAGAACACAATAGCCCC
TTAAAATTTTGATATGCTGTGGTTAATTTTACATTGACTACCTTGGGTTGTACAGTGGATGAGA
TGTACTTAGCGTCCCTAATTAACAAAGGTCGTGAGGCATATATCAGTGGAACAACAAACCCAAC
TGCTCTTCCCGCTGAGACGGTGCTGAAGATGGCTACTATTAATGGTGCAAAAGCAGTTCTGTGG
GACAATGAAATAGGTTCGCTGGAGGTTGGCAAAAAGGTGATGCTCTCAGTTGCTAGTTTGTTCA
TGTATAGCTCTCAATAACTTTGGTCCATATATTTCAGAGGTTGATAAATCTTATTTTCTTCATT
GTAAAGCCATTGAAAGTAGCCTAGAGGGGGGGGGGGGTGAATAGGCTACACCTAAATTTTTCAC
TAAAAACTTCGAGATAGTGTTAAATTCAAGTTGCACTGGTGCAAACTGGTTCAGCTGATTTTGT
TTAGTTTACAGCTGAACAAGTTTGAACCTGCTCAACTTAGATTAGATAAATAGTTAAACAAGTG
TGACAAAGTAATGAGAGATTTTTGCTTAAGACTTGCCCTAGAGATAATCCACTCAAATGGGTGA
CAAATCGATGTGAATTGGTTTCACACGATTTGCACACAATATAATCAAGTATGAACTAACCAAC
AATTTAAAGCGCTTTCCAAGAGCACACCAAGAACACACGATTTAACCCGAGGTTTGGCAACTAC
CACAAACGTGTCTTACTCCTCGTTGAGGAGCCCACAAAGGGCCGGGTCTTTTCCAACCCTAATC
CTCCACAAGCCGACCACCAAGGTCAAGGCAATCTCTTCTCAAATTGGCTCAACGAGCGGGTGAT
ACAAACTTCTTGGGGTCGTCCACAAATTTGGAGACTCCCAAGCAACCTCAATCCGTCAAGGAAC
TCAAGGTTCCAAGAGTAACAAATCCGCACAAGATTCGAGTTTGCGATGAGCTCAAGAGATGAAG
AGAATCGAGATGAAAACAACGAGTTAGACCGACTTCACCTCACACTAAGGGTCCTTCAATCAAT
TGAAGGAGATGCGATTTTGGATGTGAGAGGTGGATTGAATGCTCTTGTTTGAGAGTTGGTCAGC
CAAGAATTCGTGGAAAGGGCAGAAGTGAATGAAGAGAGAGAGTGTGAGGCTATATAAAGGAGCC
CCCAAAAGCTGGCAGCCGTTGGGGAAATCTGACTGAAAACCGGTTGAACCGGTTCTGAAACCGG
TTGAACCGGTTTCCACCAGGGTGGATCTCGGTTCACTGGCTGACTGAGCCGGAGAGTGGACCGG
TTCCAAATTCGGCTGAACCGGCCCAAAAATCGGTTGAACCGATTTTCCAACAGTCTGTACACGA
CTTTTTCTGACAGGACTGACTGGCAGACTGGCAGGTCAGAAAGTGGCAAAGTGAACAGTGCAGA
AACCGGTTGAGCCGGTTTTGAGTCCGGTTGAACCGGTTTTTTCAAACTGGCTAACAGATTTTTA
GAAAACTGAAGAGAACCCTGGGGAAATCTTAGTGGGAAGTAAAAGTGGTTTTTCCAAGAGCATT
CATGATCTAGTAAAATGTTATCTTAGAGGATTCGAAAAGGTTTGGACTGAGCTCATCGCATTTA
CTTACTCAACTATTGCGGATCCCTCTTAATTGAACAACGATTCCTATGACTCAAGAATTGTAAA
AACAAATTGCCGTTGTTCCCTAGCACTTGAAGCACGCTATATAATGTAGAATTTTAATCCGCTG
TGCTTTTTCATTTGCGTACATATATGCTCTGTGCTTCTCCTGTCTGTAGAATAACTGTATACAT
ACTAGGAGAAAACTTGTTAGAATCTCTGTTTGTTTTGTCATTTAATCACCAAAACCCTCAGTTA
GGGTTGATTGCACTTACAACCATGTTTTTTTGGTTGTACTTTTTTTTGAAGTCAGTAGTGGGTT
GATCAGCTTACTTATCCTATCAAGCTCAAATTCATTTTGACTCTTAAATTATATTATATGGTTT
AGTTGGCCCATGCAAAGTATCTTGTTTGTGTAGGCGGACTTGGTGGTGGTGAATCCATTTACAT
GGTCCATGGTCCCCTTACATGACAGGTGTGCATTACTATGATTTATTTATTTCTTAAATGTTTG
AATAACTACTATTTTTATGATTGGGTTAGCGCTGTTTTTTTTGCGTCAATGTTTACACTCTCGT
ACTTTTTTTGTGTCTACTCCATTTCACAATTTCTGTATGTAGCCTGTTAATCTTGTTGTTACCT
GATATATATCTAGTTAGTTATCTAGCCGTGCTTTTGGGCCTTTGTTTCATTGGTTGTTTGGCAT
AACACTTACCTCTCCGGCTCTCCCTAATGCACAGCATTGCCAACATTGTCTACTGCATGCGGAC
AGAGAATATTGAGTCTGTTATGTGCAATGGTCGGTGGATCATGAAGGATCATAAAATCATGAAT
CTCAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.075356716
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b