Detail information of Os06g0149450_circ_g.1


General Information
CircRNA Name Os06g0149450_circ_g.1
ID in PlantcircBase osa_circ_029682
Alias Os_ciR4911
Organism Oryza sativa
Position chr6: 2560267-2560548  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0149400
Parent gene annotation Similar to Chitinase A. (Os06t0149400-01)
Parent gene strand +
Alternative splicing Os06g0149450_circ_g.2 Os06g0149450_circ_g.3 Os06g0149450_circ_g.4 Os06g0149450_circ_g.5
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0149450-00:2
Os06t0149400-01:2
Os06t0149450-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTCCAGAGGTATAACATAGTAAATGGAGTTGTTGAGGTTGATGGTGGAAATGACGAACCAG
CCAGTGAAAATGCTGCTGAGGGTAAAGATGCAGATGggccagcatgatgaaatcgagttaaaat
tctttgaagagagagctgcgcttgaagcgaagtaccagaagctttatgaacccttgtacacaaa
ggtatact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 184
Transcript exons: 2560267-2560359,2560458-2560548
GGCCAGCATGATGAAATCGAGTTAAAATTCTTTGAAGAGAGAGCTGCGCTTGAAGCGAAGTACC
AGAAGCTTTATGAACCCTTGTACACAAAGAGGTATAACATAGTAAATGGAGTTGTTGAGGTTGA
TGGTGGAAATGACGAACCAGCCAGTGAAAATGCTGCTGAGGGTAAAGATGCAGATG

Genomic sequence GGCCAGCATGATGAAATCGAGTTAAAATTCTTTGAAGAGAGAGCTGCGCTTGAAGCGAAGTACC
AGAAGCTTTATGAACCCTTGTACACAAAGGTATACTTGTTCTTTATGTTAAATATGTGAACAGT
ATTCCTTTTGTTATTTTCTTTTGTGACAGTTACTGAACCCCTGCCCCTTTTCCTGTTTTCCAGA
GGTATAACATAGTAAATGGAGTTGTTGAGGTTGATGGTGGAAATGACGAACCAGCCAGTGAAAA
TGCTGCTGAGGGTAAAGATGCAGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.302561939
Functional Information
Coding potential Y
Potential coding position 2560475-2560274(+)
2560277-2560340(-)
Potential amino acid sequence MELLRLMVEMTNQPVKMLLRVKMQMGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVNGV
VEVDGGNDEPASENAAEGKDADGPA*(+)
MLAHLHLYPQQHFHWLVRHFHHQPQQLHLLCYTSLCTRVHKASGTSLQAQLSLQRILTRFHHAG
PSASLPSAAFSLAGSSFPPSTSTTPFTMLYLFVYKGS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015