Detail information of Os06g0149450_circ_g.2


General Information
CircRNA Name Os06g0149450_circ_g.2
ID in PlantcircBase osa_circ_029683
Alias Os06circ03189
Organism Oryza sativa
Position chr6: 2560267-2561344  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0149400
Parent gene annotation Similar to Chitinase A. (Os06t0149400-01)
Parent gene strand +
Alternative splicing Os06g0149450_circ_g.1 Os06g0149450_circ_g.3 Os06g0149450_circ_g.4 Os06g0149450_circ_g.5
Support reads 2
Tissues panicle
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0149450-00:5
Os06t0149400-01:6
Os06t0149450-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATATCATATTTGGTGTGCTTTGGTAGTAAACTTGTTCCTTCAATTTATGATAGGCTGATGA
GCTTCAGGGTCAAATGGAACATGATTATGACATTGGggccagcatgatgaaatcgagttaaaat
tctttgaagagagagctgcgcttgaagcgaagtaccagaagctttatgaacccttgtacacaaa
ggtatact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCAGCATGATGAAATCGAGTTAAAATTCTTTGAAGAGAGAGCTGCGCTTGAAGCGAAGTACC
AGAAGCTTTATGAACCCTTGTACACAAAGGTATACTTGTTCTTTATGTTAAATATGTGAACAGT
ATTCCTTTTGTTATTTTCTTTTGTGACAGTTACTGAACCCCTGCCCCTTTTCCTGTTTTCCAGA
GGTATAACATAGTAAATGGAGTTGTTGAGGTTGATGGTGGAAATGACGAACCAGCCAGTGAAAA
TGCTGCTGAGGGTAAAGATGCAGATGGTACCAAATCAAGTTTAATTTTATCTGTTGGTGAATGT
TTCACATTCTGATTTATGATTAAACCATTTTTTTTCAGCTAAAGGAGTCCCAGATTTTTGGCTT
ACTGCTATGAAAACAAATGAAGTGCTTTCTGAGGAGGTATAGTATGGTTTACTTTTGTGTTGTT
TTTTAGGTGCATTGCAGTAATTGTTGATTGTGTTATTGCTTTATTAGATCCAAGAGCGTGACGA
GCCTGCTTTGAAATATCTGAAAGATATCAAGTGGGCTAGAATTGACGATCCTAAGGGTTTCAAG
CTGGATTTTTTCTTTGATACGAACCCTTTCTTCAAGAACTCTGTCCTAACAAAAACGTACCACA
TGGTTGATGAAGATGAACCAATTTTGGAGAAAGCAATTGGGTAAGTTGTTTCATCCTCTGTTGA
AACCTGTAACTGCACGTGTTGTTAAAACTAACCATGTTGGCATGTTATGTGCACTGCAGGACTG
AAATTGAGTGGTATCCTGGTAAAAACCTGACACAGAAGATTCTAAAAAAGAAACCCAAGAAAGG
TTCAAAGAATGCAAAGCCTATTACCAAAACTGAAGTCTGTGAGAGCTTCTTCAACTTTTTCAGT
CCCCCGCAAGTACCCGATGATGATGAGGACATTGATGAAGACACTGTATGTTCTATTTTGATAT
TTGACATGCATTTGTTCAATGATATCATATTTGGTGTGCTTTGGTAGTAAACTTGTTCCTTCAA
TTTATGATAGGCTGATGAGCTTCAGGGTCAAATGGAACATGATTATGACATTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.334232653
Functional Information
Coding potential Y
Potential coding position 2560658-2560288(+)
2561108-2560274(+)
Potential amino acid sequence MKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDE
PILEKAIGTEIEWYPGKNLTQKILKKKPKKGSKNAKPITKTEVCESFFNFFSPPQVPDDDEDID
EDTADELQGQMEHDYDIGASMMKSS*(+)
MQSLLPKLKSVRASSTFSVPRKYPMMMRTLMKTLLMSFRVKWNMIMTLGPA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015