Detail information of BGIOSGA013864_circ_g.7


General Information
CircRNA Name BGIOSGA013864_circ_g.7
ID in PlantcircBase osi_circ_005228
Alias 3:39182900|39183649
Organism Oryza sativa ssp. indica
Position chr3: 39182900-39183649  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.2 BGIOSGA013864_circ_g.3 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.6 BGIOSGA013864_circ_g.8 BGIOSGA013864_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA013864-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATTCAGTACTTCA
TTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACactaaatggttttcgtcaagggaaattt
actgttctcgtagcaaccgatgttgctgcccgtggtcttgatataccgaatgttgatttggtgg
gttcacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTAAATGGTTTTCGTCAAGGGAAATTTACTGTTCTCGTAGCAACCGATGTTGCTGCCCGTGGT
CTTGATATACCGAATGTTGATTTGGTGGGTTCACATATCCTCTTCACTTCATTTGATTCTAGAT
ATTGTAATTCTGTAAATCACCCTTCCTCACAGATCTTAACTCTTTCCTTTCCATAAAGCGATTA
TCAGTGAAGCTTCTGAGTTTTAAACTCCATTATTATTTACAGTGCTAAAATTAGATCATCAAAC
TGTCCATTTTCCCCCCTGAACTTAGGTTTTTGTATTGAAATATCATCTAGCTTTGATGTGTTTT
ATAGCATCTCAATCTGATATCTTGGGTTAATCTTACGACTAGTTAACAAATTAACTGCATTCGA
GCATTATGCTATCTGGGATGAACTGTAGGTGTGTATGGATCAATTAACGAGAGGATTTCATTTT
AATGCAGATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGACGC
ACTGGCCGAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGAGAAGGACAG
TTAGATCACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGCAATTGAGGA
TGTGCTGGAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATT
CAGTACTTCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021