Detail information of BGIOSGA013864_circ_g.6


General Information
CircRNA Name BGIOSGA013864_circ_g.6
ID in PlantcircBase osi_circ_005227
Alias 3:39182763|39184630
Organism Oryza sativa ssp. indica
Position chr3: 39182763-39184630  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.2 BGIOSGA013864_circ_g.3 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.7 BGIOSGA013864_circ_g.8 BGIOSGA013864_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013864-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGTTCAAGGTGCAGTTTTCGATTTACCTGAGGAGATTGCGAGGGATTTGCTTAGTATGGAA
CTGCCCCCAGGAAACACCATAACCAAAGTGACAAAGgtgtatgcaaagggtgggaaaaccattg
tgttcaccaagacgaaaagggatgcagacgaggtatcattagcactgacaaacagtattgcttc
ggaggcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTATGCAAAGGGTGGGAAAACCATTGTGTTCACCAAGACGAAAAGGGATGCAGACGAGGTAT
CATTAGCACTGACAAACAGTATTGCTTCGGAGGCACTGCATGGTGATATTTCTCAGCATCAGCG
TGAGAGGACACTAAATGGTTTTCGTCAAGGGAAATTTACTGTTCTCGTAGCAACCGATGTTGCT
GCCCGTGGTCTTGATATACCGAATGTTGATTTGGTGGGTTCACATATCCTCTTCACTTCATTTG
ATTCTAGATATTGTAATTCTGTAAATCACCCTTCCTCACAGATCTTAACTCTTTCCTTTCCATA
AAGCGATTATCAGTGAAGCTTCTGAGTTTTAAACTCCATTATTATTTACAGTGCTAAAATTAGA
TCATCAAACTGTCCATTTTCCCCCCTGAACTTAGGTTTTTGTATTGAAATATCATCTAGCTTTG
ATGTGTTTTATAGCATCTCAATCTGATATCTTGGGTTAATCTTACGACTAGTTAACAAATTAAC
TGCATTCGAGCATTATGCTATCTGGGATGAACTGTAGGTGTGTATGGATCAATTAACGAGAGGA
TTTCATTTTAATGCAGATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGT
TCTGGACGCACTGGCCGAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGA
GAAGGACAGTTAGATCACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGC
AATTGAGGATGTGCTGGAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACG
GAGTCGATTCAGTACTTCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACCTAATGCTC
TTGCTTCTGCATTGGCACATCTGAGTGGATTTTCTCAGCCACCCTCTTCACGTTCTCTTATCAG
TCATGAGCAGGTAAGAATTAATAAGTGACCCGAGGAAATTACATGTATCCATCATTAACTGATA
TTCTACTATTTCTACCATTGTATCGAACACTTCCTTTTTCCCTACCTTAGTTATAGCTACCCAT
CAACTTCATCCAGCTGTCCTGATTTATGCCTTCTACATTTGAGGATTTATATCCACCTAATTTT
ATATGAATACAATGGGCTACTAGTACTGATTACTGAAATTGCATCTTTTATAAATTTATAATGG
GCAATCAAATAATTGTATAGAAAAGCTCCACTTTTTTTTTTGAGTTGCTCAAAGTTTTGTTGTG
CGTTTACCGTTTATCTTTTCTTTTTAAAGCTAGAAGCACTCATATGATTTCTTACCCTCTATTA
AAACACAGGGATGGGTGACTTTGCAACTAACTAGAGATCCAGGATATGGAAGGGGGTTCTTTTC
TCCTAGATCTGTTACTGGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCTGATGAAGTTGGCAAA
ATTTTCCTTACAGCAGATGAGAAGGTGAGCTCTTGCTTGAGCATGTCGATCATTAATTTCTGTG
CATGAGTGCATTGGGTCTATGAGCAATTGAGCATGCAGTTTTGAAGCTGTTGGCTGATACTAGT
TTTGCAGCATATATATCTTCTTTAATTAATGTGCATTACATGCAATAGTATGCATTGCAGAAAT
CGATGACACATATCACTACTTTTTCATGCATATCTTCAAAACTCCTGCATTTATGTGTATGACT
TTCACTGTGATGCTCATGCATTGGCGCATTGTTGGTTGTGTCAGGTTCAAGGTGCAGTTTTCGA
TTTACCTGAGGAGATTGCGAGGGATTTGCTTAGTATGGAACTGCCCCCAGGAAACACCATAACC
AAAGTGACAAAG
Conservation Information
Conserved circRNAs osa_circ_022543*
PMCS
Functional Information
Coding potential Y
Potential coding position 39182790-39184539(-)
39183449-39184627(+)
Potential amino acid sequence MVFPPFAYTFVTLVMVFPGGSSILSKSLAISSGKSKTAP*(-)
MFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQE
ELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSA
AADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKVYAKGGKTIVFTKTKRD
ADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL
PNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEH
VIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLT
RDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPG
NTITKVTKVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFT
VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE
RDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHL
SGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADE
KVQGAVFDLPEEIARDLLSMELPPGNTITKVTKVYAKGGKTIVFTKTKRDADEVSLALTNSIAS
EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT
GRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQ
YFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRS
VTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021