Detail information of BGIOSGA013864_circ_g.3


General Information
CircRNA Name BGIOSGA013864_circ_g.3
ID in PlantcircBase osi_circ_005225
Alias 3:39181302|39183732
Organism Oryza sativa ssp. indica
Position chr3: 39181302-39183732  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.2 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.6 BGIOSGA013864_circ_g.7 BGIOSGA013864_circ_g.8 BGIOSGA013864_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013864-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAGAAGAATTAGGACCTAATGCTCTTGCTTCTGCATTGGCACATCTGAGTGGATTTTCTCAG
CCACCCTCTTCACGTTCTCTTATCAGTCATGAGCAGagggctgtattgattccagctcttgacg
gccgtgacctgattgctagagcaaagacaggaaccgggaagacgctagccttcggcattcccat
gatcaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGGCTGTATTGATTCCAGCTCTTGACGGCCGTGACCTGATTGCTAGAGCAAAGACAGGAACCG
GGAAGACGCTAGCCTTCGGCATTCCCATGATCAAGCAATTAATGGAGGAGGATGATGGACGGAG
TGTGAGGTATCCATTCATCTTCCTATGCAGCTTCACATTGTATTGCATGACAATCAGTTGATAC
TTAACAAGTGCATTAACCCTTTTTTTTTCCCTTTTGGTAGGCGAGGTCGTATTCCTCGTGTTTT
GGTTCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAGGAAATAAAAGAATCAGCACCC
AAGCTCAGTACAGTCTGTGTTTATGGAGGTGTCTCATATAATGTCCAGCAGAACGCACTCTCCC
GTGGTGTTGATGTTGTTGTAGGAACACCTGGTCGCATTATTGATTTGATAAATGGCGGAAGTCT
TCAGTTGGGAGAAGTTAAGTACTTGGTCCTTGATGAGGCTGACCAAATGCTCGCAGTTGGGTTT
GAGGAGGATGTGGAAACGATATTACAACAGCTACCAGCTGAGAGGCAAAGCATGCTCTTCTCTG
CCACCATGCCTGGTTGGGTGAAGAAATTATCTAGGCGATACTTGAACAATCCTTTGACAATTGA
CTTGGTATGAACTTCGTATTTCCTTCCATTTCCATTTTTATTGGTGTGAAACATGTCACTCTTG
TTATTTTTATTTGGTTATGCCCTCAAACAAAAACATTCCAGGAATCAGTTTCATCTAGTATAAG
AGCATTCTTACATTTAATCACAGATATCATTTTGATTTTCCAAGATCAGATGTGTCAGTTGTTA
TGATCATGTTATATGCTGTAAAAATAGTAAATACAAATTCTGTCCAGCACACATGTAAGAGGAT
TAAGAGATATTAGCACTGGTCTTGAGTATGCTAATTGCACTTACACTTGAATACCTGTTGTTTC
TTGCAAGATATAATTGTGCACATGTTCTGTGAAGGTTTACTTTTATTTTTTTTGTCTGGATTAG
TCATCTTTTATTGTCATGTGTATACTCAGGTCGGCGATCAAGATGAAAAACTTGCTGAAGGAAT
CAAACTTTATGCTATCCCGCTCACATCTACATCAAAGCGCACTGTTCTTAGTGATCTCATTACG
GTATGTTATTGCAGTTCATGGATTTTTTAGCTGCCTTTTCCCCTCCTCTCTTTTCGGCTCAGCC
TCCTGAGATTCAGAAACTAATAAGATCATGAAACCAGTTACAGTTTATACAGCTATGTTGGTGT
ATCATCATGCCAGTAGATGCCCGATAAGTTTTTTTTTTTTTTTTACTTCAATCCAATTAAGATT
TCAGAACATAATTCATTCATACATCTTCCATGTCTATCGAACTTTTTACTGACTTTATAACTAG
TCTGTTTTGCTGAGCGTTGGCCACTCAATTATCTAAAAATATCTTGTTATCAGGTGTATGCAAA
GGGTGGGAAAACCATTGTGTTCACCAAGACGAAAAGGGATGCAGACGAGGTATCATTAGCACTG
ACAAACAGTATTGCTTCGGAGGCACTGCATGGTGATATTTCTCAGCATCAGCGTGAGAGGACAC
TAAATGGTTTTCGTCAAGGGAAATTTACTGTTCTCGTAGCAACCGATGTTGCTGCCCGTGGTCT
TGATATACCGAATGTTGATTTGGTGGGTTCACATATCCTCTTCACTTCATTTGATTCTAGATAT
TGTAATTCTGTAAATCACCCTTCCTCACAGATCTTAACTCTTTCCTTTCCATAAAGCGATTATC
AGTGAAGCTTCTGAGTTTTAAACTCCATTATTATTTACAGTGCTAAAATTAGATCATCAAACTG
TCCATTTTCCCCCCTGAACTTAGGTTTTTGTATTGAAATATCATCTAGCTTTGATGTGTTTTAT
AGCATCTCAATCTGATATCTTGGGTTAATCTTACGACTAGTTAACAAATTAACTGCATTCGAGC
ATTATGCTATCTGGGATGAACTGTAGGTGTGTATGGATCAATTAACGAGAGGATTTCATTTTAA
TGCAGATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGACGCAC
TGGCCGAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGAGAAGGACAGTT
AGATCACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGCAATTGAGGATG
TGCTGGAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATTCA
GTACTTCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACCTAATGCTCTTGCTTCTGCA
TTGGCACATCTGAGTGGATTTTCTCAGCCACCCTCTTCACGTTCTCTTATCAGTCATGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 39181395-39183725(-)
39181393-39183729(+)
Potential amino acid sequence MGMPKASVFPVPVFALAIRSRPSRAGINTALCS*(-)
MIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNAL
SRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLF
SATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGK
TIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP
NVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAI
EDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISH
EQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELA
KQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLV
LDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKL
AEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDIS
QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGT
AILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAER
LQEELGPNALASALAHLSGFSQPPSSRSLISHEQRAVLIPALDGRDLIARAKTGTGKTLAFGIP
MIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNAL
SRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLF
SATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGK
TIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP
NVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAI
EDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISH
EQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELA
KQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLV
LDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKL
AEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDIS
QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGT
AILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAER
LQEELGPNALASALAHLSGFSQPPSSRSLISHEQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021