Detail information of BGIOSGA014328_circ_g.3


General Information
CircRNA Name BGIOSGA014328_circ_g.3
ID in PlantcircBase osi_circ_005742
Alias 4:30520670|30521649
Organism Oryza sativa ssp. indica
Position chr4: 30520670-30521649  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014328
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014328_circ_g.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_igg.1 BGIOSGA014328_circ_g.2 BGIOSGA014328_circ_g.4 BGIOSGA014328_circ_g.5 BGIOSGA014328_circ_g.6 BGIOSGA014328_circ_igg.7 BGIOSGA014328_circ_g.8 BGIOSGA014328_circ_g.9 BGIOSGA014328_circ_g.10 BGIOSGA014328_circ_g.11 BGIOSGA014328_circ_g.12 BGIOSGA014328_circ_igg.13 BGIOSGA014328_circ_igg.14 BGIOSGA014328_circ_igg.15 BGIOSGA014328_circ_igg.16
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014328-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAAGCTCAGGATCAAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATC
TTCCAGACGTTTCAATGACACTTTACAATTAACCACtgggagtaagtcaaggtcatgccgtaat
gaagtgacatctattgctttctcgtagcgtggaggttggaagggagacccaaacaatatattgt
cccggacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGAGTAAGTCAAGGTCATGCCGTAATGAAGTGACATCTATTGCTTTCTCGTAGCGTGGAGGT
TGGAAGGGAGACCCAAACAATATATTGTCCCGGACCTGCAGAGATGATAACATTATATCTGTAG
AAGCCATAAAAGGTTCAATATAACAATCAACATAAATGGAGATATTGTGTCTCACAGTTGCATT
GAAGATCCATGAAACTTGAGGAACATAAGCCACTGTTCCACGAAGGACCACCGATGTATTCGAT
CCTGACACTGGTGGTATTTCACCAAGCATTGCAGAAATAAGAGAAGTCTTCCCCTCCCCAGTGC
TTCCTACTATTGCAACCAAACTGCCCATAGGTACATCCAGATTGACGTTTGATAATGTTGGTCT
CTCAGCCTGCCAAAATTTGAAAAATTAGTTTTTGGAGCAACATCATAAGATTAGAGGAAACATG
CAGTGTTAACAACTGTATAAAATTATGTGACAAAAATGGAAACCAATAAGAGCTGGTCAGAATA
GTATTGTGAAGCTTACTACCAAATCATCAATTCATTATGAACTACGGAGACATCTGTAATAGAC
ATCTTTCTATGGATCGACCTCACTACCTCAGTAACTAGATGCTCTCTTTTGCACTGACCTTGCC
ATTCATGAAGCATGCTAGTCTATCAATACTCTAATTCAGTATTTATTTGCCCAAACTTTTGTTT
CTTTTCAGTACTCCAGACAACAGAACAATAATATATGTGTTATATTATAATATCAATGAATGAT
GAGAGTTGAATGTGTGATAGTCAACATAGATATATTTAGATACCAGGCAAATATCTGAAACATG
AAATTACCTGCGATTCCCATGAAAAATATCCATTCTTAATAGAAATTGCTGGAAGCTCAGGATC
AAGAGGTGGATTGGGCAGAAGTAATCTCTCTTCAGCCAAGAGGAGATCTTCCAGACGTTTCAAT
GACACTTTACAATTAACCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 30521019-30520672(-)
30520709-30521627(-)
Potential amino acid sequence MGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGS
PFQPPRYEKAIDVTSLRHDLDLLPVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNG
YFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVA
YVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDLLPVVNCKVSLKRLEDLLLAEE
RLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAM
LGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSPFQPPRYEKAIDVTSLRHDLDL
LPVVNCKVSLKRLEDLLLAEERLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPM
GSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRDNILFGSP
FQPPRYEKAIDVTSLRHDLDLLP(-)
MSLHYGMTLTYSQWLIVKCH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021