Detail information of PGSC0003DMG400027903_circ_g.1


General Information
CircRNA Name PGSC0003DMG400027903_circ_g.1
ID in PlantcircBase stu_circ_001113
Alias chr09:6676081|6676254
Organism Solanum tuberosum
Position chr9: 6676082-6676254  JBrowse»
Reference genome 3.0.38
Type   e-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400027903
Parent gene annotation 60S ribosomal protein L1
Parent gene strand -
Alternative splicing PGSC0003DMG400008482_circ_ag.1 PGSC0003DMG400020343_circ_g.1 PGSC0003DMG400020347_circ_g.1 PGSC0003DMG400002168_circ_ag.1 PGSC0003DMG400024261_circ_ag.1 PGSC0003DMG400008917_circ_g.1 PGSC0003DMG400008917_circ_g.2 PGSC0003DMG400008917_circ_g.3 PGSC0003DMG400008924_circ_ag.1 PGSC0003DMG400008926_circ_g.1 PGSC0003DMG400008934_circ_g.1 PGSC0003DMG401008964_circ_igg.1 PGSC0003DMG402002659_circ_igg.1 PGSC0003DMG402002659_circ_ag.1 PGSC0003DMG400002662_circ_ig.1 PGSC0003DMG400002662_circ_ig.2 PGSC0003DMG400002706_circ_ig.1 PGSC0003DMG400021562_circ_g.1 PGSC0003DMG400020909_circ_ig.1 PGSC0003DMG400020913_circ_ig.1 PGSC0003DMG400020913_circ_ig.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered PGSC0003DMT400071725:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTTTGCATAAGGATTGAGCTTCAGCAATACGTTCAGGTTCTTCAATGGATTCTTCTTCAAAG
TTGCCCTCTTGTTAACATCCTTtttgtaatttgatgtctcttcttgtcgagcttctccttcttg
gccttgacacgctgtgcctcggccaaaagggacatcctcctggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTAATTTGATGTCTCTTCTTGTCGAGCTTCTCCTTCTTGGCCTTGACACGCTGTGCCTCGG
CCAAAAGGGACATCCTCCTGGCAGTCTTTGCATAAGGATTGAGCTTCAGCAATACGTTCAGGTT
CTTCAATGGATTCTTCTTCAAAGTTGCCCTCTTGTTAACATCCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.421622688
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018