Detail information of PGSC0003DMG402002659_circ_igg.1


General Information
CircRNA Name PGSC0003DMG402002659_circ_igg.1
ID in PlantcircBase stu_circ_001104
Alias chr09:3165020|3191274
Organism Solanum tuberosum
Position chr9: 3165021-3191274  JBrowse»
Reference genome 3.0.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400008482_circ_ag.1 PGSC0003DMG400020343_circ_g.1 PGSC0003DMG400020347_circ_g.1 PGSC0003DMG400002168_circ_ag.1 PGSC0003DMG400024261_circ_ag.1 PGSC0003DMG400008917_circ_g.1 PGSC0003DMG400008917_circ_g.2 PGSC0003DMG400008917_circ_g.3 PGSC0003DMG400008924_circ_ag.1 PGSC0003DMG400008926_circ_g.1 PGSC0003DMG400008934_circ_g.1 PGSC0003DMG401008964_circ_igg.1 PGSC0003DMG402002659_circ_ag.1 PGSC0003DMG400002662_circ_ig.1 PGSC0003DMG400002662_circ_ig.2 PGSC0003DMG400002706_circ_ig.1 PGSC0003DMG400021562_circ_g.1 PGSC0003DMG400020909_circ_ig.1 PGSC0003DMG400020913_circ_ig.1 PGSC0003DMG400020913_circ_ig.2 PGSC0003DMG400027903_circ_g.1
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   GT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAGCTGATCAATTGGAATTGGGATCTAAATTTTATGTTATGGGATTTTCTATGGGTGGACA
AGCTGTTTGGGGCCTTCTCAAATATATTCCTCACAGttggcaggagcagcacttctaacacctg
tggttaactattggtggcctagtttcccatcaaatttgtcaacaaaatcatattatgatcaact
tttgcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.079727866
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs stu-miR8041b-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018