Detail information of PGSC0003DMG402002659_circ_ag.1


General Information
CircRNA Name PGSC0003DMG402002659_circ_ag.1
ID in PlantcircBase stu_circ_001105
Alias chr09:3190168|3193651
Organism Solanum tuberosum
Position chr9: 3190169-3193651  JBrowse»
Reference genome 3.0.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400008482_circ_ag.1 PGSC0003DMG400020343_circ_g.1 PGSC0003DMG400020347_circ_g.1 PGSC0003DMG400002168_circ_ag.1 PGSC0003DMG400024261_circ_ag.1 PGSC0003DMG400008917_circ_g.1 PGSC0003DMG400008917_circ_g.2 PGSC0003DMG400008917_circ_g.3 PGSC0003DMG400008924_circ_ag.1 PGSC0003DMG400008926_circ_g.1 PGSC0003DMG400008934_circ_g.1 PGSC0003DMG401008964_circ_igg.1 PGSC0003DMG402002659_circ_igg.1 PGSC0003DMG400002662_circ_ig.1 PGSC0003DMG400002662_circ_ig.2 PGSC0003DMG400002706_circ_ig.1 PGSC0003DMG400021562_circ_g.1 PGSC0003DMG400020909_circ_ig.1 PGSC0003DMG400020913_circ_ig.1 PGSC0003DMG400020913_circ_ig.2 PGSC0003DMG400027903_circ_g.1
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   GT-GG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGAAAAAAAAAAAATGGCAACAAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTA
AAGCTAAGCAAAAAAGTTCTTTTCCTCTTCCTTCTGaatgatgagaaatatggtagcccttttt
ggaattgtgatattggcactgatttatagggcaattatgccaccatcaccaaagatttgtggtt
caccaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGATGAGAAATATGGTAGCCCTTTTTGGAATTGTGATATTGGCACTGATTTATAGGGCAATT
ATGCCACCATCACCAAAGATTTGTGGTTCACCAAATGGACCTCTAATTACAGCACCGAGAGTGA
AGCTTTCTGATGGGAGATATTTGACATATAAAGAAAATGGTGTTCCTAGAGACCAAGCAAAACA
CAAATTTGTTTTCATCCATGGCTTTGATTGTGTTAGACATGATGTTGCTTTGCACACAACTACT
TCTCCTGTATGTATGTTTCATCTTTACTTGTTCTCCCCTCGCCCTCCCTTAGAATAGTTTTTAG
TTTCTTTTTCGTTTTGTTTGTGTCCGATATTTGTTTTGGGGTCCGACTAATTTAGATTTGTGTT
GGGAGGTTTCACTTTTAAGGCTCCCGACCAAAGATTACTCTATTTTCAGAGCTCAACCCCCAAG
AGTCTGGTGATTCTAGTTAAGGATGAAGGGATACTTTTAAAGGTTGTTTGAGTATTCGTCTTGG
TTTCCCATCCGGTGTCCGGCATCTATTGGAGCCCTACTAATCTGAATTTGTGTCCGGAAGTCCT
AGTTTTAAGGCTCCCGGCCCAATGCAACTACATTTTCAGAGTTCAAACCTTAGATCTCTGGTTA
ATTATTGAGGGGTACTTATAAAGGTTGTGTTTAGTATTCTTTTTAGTTTCCCACCCGGTGTCCA
ACATCCGATTTGGTGCATGACTAGTCCGAATTCACATCTGGAAGTCCCACTTTGAGGGTTAAGG
CTCCTAACAACAGCGACTTTATTTCTAGAGCTTGGATCCGGAGCTTGATTAAGGATGGAGGGAC
ACTTACCGTCTGCTTGAATATATTTGTGGCTGCAATTAATGAAATTTTGTTTGTGGTTGCAGGA
GCTTATGCAAAGCTTGGGAATATATATTGTGTCAATTGATAGACCTGGTTATGGTGAAAGTGAT
CCTCATCCAAAAAGAACGCCAAAGACCTTAGCTCTTGATATAGAGGAATTAGCTGATCAATTGG
AATTGGGATCTAAATTTTATGTTATGGGATTTTCTATGGGTGGACAAGCTGTTTGGGGCCTTCT
CAAATATATTCCTCACAGGTATCATTTAGTTTCCTCGCACCTCAACTATTTAACAAGGTACATG
TTACGTCCCACCAGCGCATATATGGGTAACTTTGTCTACCAATGCTTAAGCAGATGAGGAGAAG
TCATCTTATGAATTGACTTGATTGTTCAGAGAAAGTAGTTTAGTTCTTTGGGTTTAACTTATAG
ACACTGACGGTGCCACTGATTTTTATAGTATTAGTGTATGTTAATCTGTTGTAGTTATCTTTTA
GATGACTTTCTCAGTGTCCGTATTAGCTTGTCGTATTAGTTGTACCACATAGGACTGAACTTCC
CACTAGTATAAGTTAAATTTATGGTGTCTGGATTAGTTTGTTCGCACCTCAACTATTTAACAGA
GTACCTGCTAACTCCCACCAGCGCATACATGGGTAACTTTGTCTATCAATGCTTAAGCAGGTGC
GGAGAAATCATCTTACGGATTGGCTTTTTTTTTCCTTTTCTATGTGTATAAATTGATTTTTCAG
AGAAAGTAGTTTAGTTCTTCAGATTTAACTTATAGACACTGACGATGCTAACGACTTTTACATT
ATTAGTTTACATTAATCTGTCGTAGTTATCTTTTAGGTGACCTTCTCGGGTGCATATAGGTTTC
CATCTTAACTTGTGACATTTGAAATGTGTAACAGATTGGCTGGAGCAATTCTTCTAACACCTGT
GACTAACTACTGGTGGGGTAGTTTTCCTGCAAACTTGACTAAACAAGCGTACTACGAACAGCTC
GTGCAGGATCAATGGACACTTCGGATTGCACACTATTTTCCATGGCTGACTTACTGGTGGAACA
CTCAAAAATTGTTTCCTTCTTCCAGCGTTGCAACGGGCAGCGAGGATATTCTTTTAGAGCAAGA
CAGAGTTCTAATGCCTATCTTTGATTCATATCAGAGTAAATATCGGGTGAGTACTCCTTTAGCT
TCTTAGCATATCCACATTTCATTTTCACGCGACTTTGAAGTAAGATCAATGGTGGATCAACAAT
GGATTCGCGAATTTGGAAAAACTCTGTGCTTCAAATAGAGTTACATATAAGTTTTTTGCATCAT
TAGCGACAGTAGGAGACGCTTCATATCAAATCTGATATAGTAACACCGTAACACGCAAGATAGA
GTCATAACTTGTTATAACTAGTTAAATTACGCTGATAGTATTGTATATAACTTAATTCCACAAT
TATATGTGTTGATTTTGATTAGCAAATTGTTTGAGTTAATTCTCCTAATTCTTGTTCTTGCCTA
ATGCATACTAGCAACTAACAAGTACTTAACTCTGAGTTCTGTTCTGTTTTTTGATTTGAGGTTA
GGACTTGGTAAGACAGCAAGGGGAGTATGAGTCCATCCATCGCGACCTAATGGTAGGTTTCGGG
ACATGGGAATTTGATCCGATGGAACTAGAAAACCCATTCCCTAACGGGGAAGGGTCCGTTCACA
TTTGGCAAGGTGATGAAGACGGGCATGTACCAGTCATTCTACAACGATTCATCGCGAAGAAACT
CCCATGGATTCACTATCATGAAATGAAAGGAGGAGGTCATATGTTTCCATGGGCTGAAGGAATG
GGAGATAAAGTCATGAAGACATTTTTACTTGGAGAGCCTTTTGTTATGTAAAAGCTATAAAGGG
CTATTGGTTTTACTATTGGATTCAATGACTCTTTTGGTCATTGAACAAATTTGAATATTTTGTT
AATAATTAAATTCTACTCAAGTCGTTGGGACTCTTCAAAAATATTATTGTATGTATGTCGAATC
TTCTAAATGCTATACATTTTTGAAGAGTTCGACCAACATTGTTTTTTTCGATCAAGTAGTAGAT
ATAGTCATAAACACTTTCTAACTTGTGAAGCTCTTGTCATTGAACAAACTTGAATATTTGTTAA
TAATTAATAAGGTCATAATACATCAAACATATACTTAAACTTTGTTGTGTAATTAATTAAGGTG
TACGTAAGTTAATACGAATACTATTAATATTTAGTAATAGTACTATATATTAAAAATAAATTAT
TCATTGTTTCCAGTTCCACAGTCCTAAACTTTTTTTTTTAAAAAAGGGAAAAAAATAGAAAGAA
AGGAAAAAAGGTTTTTGCCAAATGTTATGGATAGATCATATGCTAAAAATAGCAACACTTTTAG
ATCAGAGAGATGAGACACAGATCTCTTCAATCTTCCTTTTTGTATAATTTTTGTAAATTTAGAC
TGTAAAATACAGAATTTGTAATTTCAAAATCAAGAATTTGATTCAGCTGAAAAAGAAGGAAAAA
AAAAAAATGGCAACAAAGAAGATTTCAGCAGCTTCAGCTAGGGCTCATACTCGTAAAGCTAAGC
AAAAAAGTTCTTTTCCTCTTCCTTCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.123737937
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018