Detail information of AT2G03730_circ_g.8


General Information
CircRNA Name AT2G03730_circ_g.8
ID in PlantcircBase ath_circ_012710
Alias At_ciR1675
Organism Arabidpsis thaliana
Position chr2: 1139408-1139948  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G03730
Parent gene annotation ACT domain-containing protein ACR5
Parent gene strand -
Alternative splicing AT2G03730_circ_g.1 AT2G03730_circ_g.2 AT2G03730_circ_g.3 AT2G03730_circ_g.4 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.7 AT2G03730_circ_g.9
Support reads 6
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03730.1:3
AT2G03730.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCGCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAAT
TGTCTCTGGTGGAAGAAGAAGAGGAAGACTTTGCAActtaatgacagtaacatctttgcagact
tcgttatcgatcacaaccctgaaataatgataatcaaactaaactcaagtccaaattcgaagaa
caaaacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 262
Transcript exons: 1139408-1139948
CTTAATGACAGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTTGGTGGATTCACTCTT
CTGATGAACTTAGCAATCTCATCATCCATATTATATGAATAGCTCAAGCAAACATCCATTCTCG
ATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGCGCCAATAAAGAAAGGGGAAATTGAAT
TCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTCTCTGGTGGAAGAAGAAGAGGAAGACT
TTGCAA

Genomic sequence CTTAATGACAGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTGAAATAATGATAATCA
AACTAAACTCAAGTCCAAATTCGAAGAACAAAACAAACAATTCGAGATTAGTCAAAAAATTACC
TTGGTGGATTCACTCTTCTGATGAACTTAGCAATCTCATCATCCATATTATATGAATAGCTCAA
GCAAACATCTGTCCACAAAAAAAAAAAACCAATTCCATTAGATTCAATAACAACGAAGACCCCT
TTTGGGAAAAAAACAGAGAGTAAACCCTAAAACGATCAAAACAACAAAAGACTCAAAATTGAAC
AAAACCCAGTTACGAAAACAAATCATAAGATACAAATTTGGATTCAATCATCGGAAAACAGAGA
GAAAAGTAACGAACCCATTCTCGATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGCGCC
AATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTCTCT
GGTGGAAGAAGAAGAGGAAGACTTTGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.129531254
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015