Detail information of AT2G03730_circ_g.4


General Information
CircRNA Name AT2G03730_circ_g.4
ID in PlantcircBase ath_circ_012706
Alias 2:1138991-1139303
Organism Arabidpsis thaliana
Position chr2: 1138991-1139303  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03730
Parent gene annotation ACT domain-containing protein ACR5
Parent gene strand -
Alternative splicing AT2G03730_circ_g.1 AT2G03730_circ_g.2 AT2G03730_circ_g.3 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.7 AT2G03730_circ_g.8 AT2G03730_circ_g.9
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03730.1:2
AT2G03730.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAACATTGAAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCA
GATTAAGCTCAGTCAAAACTTGAACAACCTCCAGAAtgtagtcgacagattgtttaaccccaat
ggttgatctcattgatggactgaagcaagaagactcatcaggaccaagagactgcaatcacaca
ccacagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAGTCGACAGATTGTTTAACCCCAATGGTTGATCTCATTGATGGACTGAAGCAAGAAGACTC
ATCAGGACCAAGAGACTGCAATCACACACCACAGAAAGAGTCAAGTAACCAAAATCAAACAGAA
AACAAGAGACAATCATATCACTTCACTTACTTTACGGATATATTCAAGAACAATTTCATCGGTA
ACTTTGTTCCCATCTTGATCAGTAACATTGAAAACATCCATAAACCAGCCACCATCAGAGGAGA
TATAAGCTTTCTTAATAGTCAGATTAAGCTCAGTCAAAACTTGAACAACCTCCAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.228330078
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020