Plant Circular RNA Database

Detail information of AT2G03730_circ_g.7

			
						 General Information
					
						CircRNA Name
						AT2G03730_circ_g.7
					
						ID in PlantcircBase
						ath_circ_012709
					
						Alias
						Ath_circ_FC1157
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 1139149-1139948  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, CIRI-full
					
						Parent gene
						
							AT2G03730						
					
						Parent gene annotation
						
							ACT domain-containing protein ACR5
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G03730_circ_g.1 AT2G03730_circ_g.2 AT2G03730_circ_g.3 AT2G03730_circ_g.4 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.8 AT2G03730_circ_g.9 						
					
						Support reads
						1/13
					
						Tissues
						root/seedlings
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G03730.1:4
AT2G03730.2:4

General Information
CircRNA Name	AT2G03730_circ_g.7
ID in PlantcircBase	ath_circ_012709
Alias	Ath_circ_FC1157
Organism	Arabidpsis thaliana
Position	chr2: 1139149-1139948 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, CIRI-full
Parent gene	AT2G03730
Parent gene annotation	ACT domain-containing protein ACR5
Parent gene strand	-
Alternative splicing	AT2G03730_circ_g.1 AT2G03730_circ_g.2 AT2G03730_circ_g.3 AT2G03730_circ_g.4 AT2G03730_circ_g.5 AT2G03730_circ_g.6 AT2G03730_circ_g.8 AT2G03730_circ_g.9
Support reads	1/13
Tissues	root/seedlings
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G03730.1:4 AT2G03730.2:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGCGCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAAT
TGTCTCTGGTGGAAGAAGAAGAGGAAGACTTTGCAAtttacggatatattcaagaacaatttca
tcggtaactttgttcccatcttgatcagtaacattgaaaacatccataaaccagccaccatcag
aggagata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 445
Transcript exons: 1139149-1139331,1139408-1139453,1139535-1139607,1139806-
1139948
TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG
AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT
CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCTTAATGAC
AGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTTGGTGGATTCACTCTTCTGATGAAC
TTAGCAATCTCATCATCCATATTATATGAATAGCTCAAGCAAACATCCATTCTCGATTTTTCGT
TGGTGATTGATTCTGTGAAAGATCTTCGCGCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTT
GTCTATTTGATGATGATGATGGAATTGTCTCTGGTGGAAGAAGAAGAGGAAGACTTTGCAA
Transcript length: 326
Transcript exons: 1139149-1139948
TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG
AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT
CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCCATTCTCG
ATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGCGCCAATAAAGAAAGGGGAAATTGAAT
TCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTCTCTGGTGGAAGAAGAAGAGGAAGACT
TTGCAA
						
					

						Genomic sequence
						
							TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG
AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT
CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCTAAAACAC
AAATCAAAACGTTCATACTCTTTTCACTAAATCAAAACCTAACCATATCTCATAGACGTTTCAA
TACCTTAATGACAGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTGAAATAATGATAA
TCAAACTAAACTCAAGTCCAAATTCGAAGAACAAAACAAACAATTCGAGATTAGTCAAAAAATT
ACCTTGGTGGATTCACTCTTCTGATGAACTTAGCAATCTCATCATCCATATTATATGAATAGCT
CAAGCAAACATCTGTCCACAAAAAAAAAAAACCAATTCCATTAGATTCAATAACAACGAAGACC
CCTTTTGGGAAAAAAACAGAGAGTAAACCCTAAAACGATCAAAACAACAAAAGACTCAAAATTG
AACAAAACCCAGTTACGAAAACAAATCATAAGATACAAATTTGGATTCAATCATCGGAAAACAG
AGAGAAAAGTAACGAACCCATTCTCGATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGC
GCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTC
TCTGGTGGAAGAAGAAGAGGAAGACTTTGCAA
						
					

			
		

Sequences
Splice junction sequence	TCGCGCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAAT TGTCTCTGGTGGAAGAAGAAGAGGAAGACTTTGCAAtttacggatatattcaagaacaatttca tcggtaactttgttcccatcttgatcagtaacattgaaaacatccataaaccagccaccatcag aggagata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 445 Transcript exons: 1139149-1139331,1139408-1139453,1139535-1139607,1139806- 1139948 TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCTTAATGAC AGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTTGGTGGATTCACTCTTCTGATGAAC TTAGCAATCTCATCATCCATATTATATGAATAGCTCAAGCAAACATCCATTCTCGATTTTTCGT TGGTGATTGATTCTGTGAAAGATCTTCGCGCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTT GTCTATTTGATGATGATGATGGAATTGTCTCTGGTGGAAGAAGAAGAGGAAGACTTTGCAA Transcript length: 326 Transcript exons: 1139149-1139948 TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCCATTCTCG ATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGCGCCAATAAAGAAAGGGGAAATTGAAT TCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTCTCTGGTGGAAGAAGAAGAGGAAGACT TTGCAA
Genomic sequence	TTTACGGATATATTCAAGAACAATTTCATCGGTAACTTTGTTCCCATCTTGATCAGTAACATTG AAAACATCCATAAACCAGCCACCATCAGAGGAGATATAAGCTTTCTTAATAGTCAGATTAAGCT CAGTCAAAACTTGAACAACCTCCAGAAGTATCCCATGTTTATTCGCACTATCCACCTAAAACAC AAATCAAAACGTTCATACTCTTTTCACTAAATCAAAACCTAACCATATCTCATAGACGTTTCAA TACCTTAATGACAGTAACATCTTTGCAGACTTCGTTATCGATCACAACCCTGAAATAATGATAA TCAAACTAAACTCAAGTCCAAATTCGAAGAACAAAACAAACAATTCGAGATTAGTCAAAAAATT ACCTTGGTGGATTCACTCTTCTGATGAACTTAGCAATCTCATCATCCATATTATATGAATAGCT CAAGCAAACATCTGTCCACAAAAAAAAAAAACCAATTCCATTAGATTCAATAACAACGAAGACC CCTTTTGGGAAAAAAACAGAGAGTAAACCCTAAAACGATCAAAACAACAAAAGACTCAAAATTG AACAAAACCCAGTTACGAAAACAAATCATAAGATACAAATTTGGATTCAATCATCGGAAAACAG AGAGAAAAGTAACGAACCCATTCTCGATTTTTCGTTGGTGATTGATTCTGTGAAAGATCTTCGC GCCAATAAAGAAAGGGGAAATTGAATTCTTCCCTTGTCTATTTGATGATGATGATGGAATTGTC TCTGGTGGAAGAAGAAGAGGAAGACTTTGCAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.203869464

Conservation Information
Conserved circRNAs	NA
PMCS	0.203869464

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to heat stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to heat stress

			
						 Other Information
					
						References
						Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT2G03730_circ_g.7

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