Detail information of Os10g0160000_circ_g.7


General Information
CircRNA Name Os10g0160000_circ_g.7
ID in PlantcircBase osa_circ_006260
Alias NA
Organism Oryza sativa
Position chr10: 3837549-3840512  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0160000
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15
) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing pr
otease 12) (Deubiquitinating enzyme 12). (Os10t0160000-01);Simil
ar to Ubiquitin carboxyl-terminal hydrolase. (Os10t0160000-02)
Parent gene strand -
Alternative splicing Os10g0160000_circ_g.1 Os10g0160000_circ_g.2 Os10g0160000_circ_g.3 Os10g0160000_circ_g.4 Os10g0160000_circ_g.5 Os10g0160000_circ_g.6 Os10g0160000_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0160000-01:5
Os10t0160000-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTATCTCTCCTGGTCTACTTGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTG
ATTAAGCCCACATAGCTTTGCCAGTTAAGCCACCAGctgtagcccaagtggattttctgtattt
atctcccgactgtaatcctgtaaaaagtactccaccaatggaggtgtatgcaccaaggattgta
tagcactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 919
Transcript exons: 3837549-3837941,3838514-3838609,3838707-3838766,3839592-
3839736,3840288-3840512
CTGTAGCCCAAGTGGATTTTCTGTATTTATCTCCCGACTGTAATCCTGTAAAAAGTACTCCACC
AATGGAGGTGTATGCACCAAGGATTGTATAGCACTGTTCATGAAACATGTATTTCCCAAGTTAT
GTAAACCACTCAGTCCATGGATATCATCCTTTGTGCCATTGGAGAAACTATAACCATCTTCTGC
GTCCCTTAATAAAGGACTAAAGCTATTATCTTGGGAAAAACTGGAACCAAATCCAGATGAAAAA
CCATTTGAAAATGCAGGACCTCCAGCAATTGAAAACGATGATGTTGAGGGTTCCAACGGAATTA
ATGCTAGTTCATTATTTGATCTTGTACCAAGATCCGAACACCAAGCATCATCTGCCTTTGCCTC
TATGATAATCTCCTGGTCCATCATCAGTTGAGCTTCCTCAACCGTCTCATTAAGATTTATCAGT
TTTTTTCCCTTTGTCTTTTGGTAAAAATCCCAGATGTCGATCTTAGACTGTTCGACGGACAAAA
GTGAGCAAACCAAGCTATAGAGCTCACTAACTTTGGCCTTTCTACTAATTCTGATAATTCTCTC
CAAGCTGTCTCTTCCATCAAATAATTTCAGACGGAGGGGATAGACATCCACAATGTAACTTCTG
GAAGTTGGACTACTACAAATTACTCTTCTTGAGAGTTCTGGTCCACCTTTGTACCATTCATGTA
GCTTCCTCCATACTTCCTGGGGCACCAAAGCGTAGTCATCTCCTTCCCTCAGGGTTCTTTGAAG
CTCTGGCTCATCACCAATACTGCTGCTTTCCTCTGAAACTAGCTTTGAGTTATCTATCTCTCCT
GGTCTACTTGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTGATTAAGCCCACAT
AGCTTTGCCAGTTAAGCCACCAG

Genomic sequence CTGTAGCCCAAGTGGATTTTCTGTATTTATCTCCCGACTGTAATCCTGTAAAAAGTACTCCACC
AATGGAGGTGTATGCACCAAGGATTGTATAGCACTGTTCATGAAACATGTATTTCCCAAGTTAT
GTAAACCACTCAGTCCATGGATATCATCCTTTGTGCCATTGGAGAAACTATAACCATCTTCTGC
GTCCCTTAATAAAGGACTAAAGCTATTATCTTGGGAAAAACTGGAACCAAATCCAGATGAAAAA
CCATTTGAAAATGCAGGACCTCCAGCAATTGAAAACGATGATGTTGAGGGTTCCAACGGAATTA
ATGCTAGTTCATTATTTGATCTTGTACCAAGATCCGAACACCAAGCATCATCTGCCTTTGCCTC
TATGATAATCTGCAAGCATAAAGAAAGAAGTTGCATCTTCAGTTAATGTACAGACAGAAAATAG
AAAATTGTTGGCTTGCCAACAAAATAGGGGTAAATCGTTAAGAATAATAAGATTCAGGACACCC
ACAATACAGATAGTGAACATCTTAGAAGCAATAGTACATATTCATACCAGTACATATTCATACC
CGAACATTGCAATGGTGCAAATGTAAACCATATTCATATGATAAAACACACTGATCAGAAGCAT
ATTCATATGATAAAGACAAATGAGCCAACTTTATTAACTCAAAAACAATTCTCATGTCAACCAT
AATAGAACTTGAAAAGTGCAAATGTAAATTAAGATAATAAATTAAGCAATATTTAGGAGTTAGA
CAATTTATGACAAAGTCATTATCCATGTGCAAGGTGACATCCTAAGGCAGACAGCAGACCATAG
ATGAAAAGGGCGCATAGCAACAATAACAACAAAAAGCCAGCGACCATCTCGCTGCCAGAATAAA
GGAAACAATCATAGGTTTCAGCAGATAAAACAATAGATATGTGAATGGGAATTGCATAGTGCAT
AATACCTCCTGGTCCATCATCAGTTGAGCTTCCTCAACCGTCTCATTAAGATTTATCAGTTTTT
TTCCCTTTGTCTTTTGGTAAAAATCCCAGATGTCGATCTGAAGCATTAAAGTAGATGGAGCAAA
GAATCATATACATAACCATAACTGACACTACAGATAGAGATATTAGATGAATAAATGATGATGC
TTGTACCTTAGACTGTTCGACGGACAAAAGTGAGCAAACCAAGCTATAGAGCTCACTAACTTTG
GCCTGAAAGCACCAAATACAAACGTCAAAAAATAAGTCAAGTCAATTGCACAAGAAACTAGAGT
ATCCAAGAAAGAAGATAATAGAAAGTTAACAAATTTACTGTTCAACAAAAGAGTATCTAAGAAA
GAAGATAGTAGAAAGTTCATCTTTCTACTTTTTTAGTAAAAGTGCTATTAGTTCAAGCAGTTAG
TAAAACCAGCATTCAAAGTATTTGCCATTGCGCATCAAATTTGTAACATTTTTTTCCTTCTGGT
AATAGTCAACCAAAAATATCAGATCAAATTCTGAAATTCAAGGGCTCAGCATACCAAAGTAGAA
GATCGCAACAAGCAGGTGATGAACAGATGCGATTTCTTTGACACTTCATCACAAAGAGGGAATC
CTCATTGCTTTATTTCATATAATGCAAATGTGTAAGCACTGGTTTTTATTTGACAAATGTGACT
CTCCAACAATGTGATCAAGGTATAAAGAATGCCTAAACTGATCATCTAACCTATCAAATATAAG
AAATGCTCCGATTTGTCCCACACAATAAGCACAGATCAAGGAGGCATGATGGCTAAGATAAGCT
AATGTGAAATACAACCAAATGTTAACCACACAACCTCTTTGAAGCAATAAATTAGGGCTGGATA
GTGGAATCATCATTGTAATAACTACACTATTGATTTCATCATCAATGGATAACTATGGAGGGAC
TACATCCCAAAAGAAATGCCAAACATTATGAAACCAGGGAAGTTTCAAGGAGCATCAGTCGCAT
TATTGACGGTTAATTACATATGAAGCACAATGTCACAATATAAATCAAATATACCATACCTTTC
TACTAATTCTGATAATTCTCTCCAAGCTGTCTCTTCCATCAAATAATTTCAGACGGAGGGGATA
GACATCCACAATGTAACTTCTGGAAGTTGGACTACTACAAATTACTCTTCTTGAGAGTTCTGGT
CCACCTTTGTACCTGAAAAGTATTCATGTGTCCATGAGTTGATGATCCCAATTGAAGAAGAATG
TATTCAAGTACATTAGGCCATGGACATTAGGGATAAGTTATGGTTACACTAGTATTCTGGCATA
ATCCATTGAAGAGCAACCTGACCTCATGAGTGAAAACGCGTACAGTATGCATTTACCAGTTAGC
ACATCATTGTTTTAAACAAATATCAACAGGAAACAGAAAAATTGAATAGGGCAACAACTAATTG
CCAACAGACTGAGCAAACAGGACTACAAACCAGGCTTTTTTGGTTTGCACCTAAGTGGAGCACA
TGCAATCTACAATGTGGCATATCAAAGCCCTGGCAGCCCAAGCTTGGCCAAATGAACAAGAGCG
CCTAAAGAAAATAAGAACTAAAAAAATGTCGCAAAATGGAACTGTAGTTATATGATCAAATTTT
AATCAGGCAACCATTTTCTCTCATGACAAAAAGTAAAGAGACAAACCCGTGGTTTTATGGGTAC
AACAAACTTTCTGACATGAAGGCAGTTAAACAGACATATAACATTGCATACCATTCATGTAGCT
TCCTCCATACTTCCTGGGGCACCAAAGCGTAGTCATCTCCTTCCCTCAGGGTTCTTTGAAGCTC
TGGCTCATCACCAATACTGCTGCTTTCCTCTGAAACTAGCTTTGAGTTATCTATCTCTCCTGGT
CTACTTGGAGCTTGAGGAAGCATGTCAGCATCATTCTCATCAGGTTTGATTAAGCCCACATAGC
TTTGCCAGTTAAGCCACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.205703666
Functional Information
Coding potential Y
Potential coding position 3837662-3840480(-)
3840453-3840503(-)
Potential amino acid sequence MFHEQCYTILGAYTSIGGVLFTGLQSGDKYRKSTWATAGGLTGKAMWA*(-)
MLPQAPSRPGEIDNSKLVSEESSSIGDEPELQRTLREGDDYALVPQEVWRKLHEWYKGGPELSR
RVICSSPTSRSYIVDVYPLRLKLFDGRDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIWD
FYQKTKGKKLINLNETVEEAQLMMDQEIIIEAKADDAWCSDLGTRSNNELALIPLEPSTSSFSI
AGGPAFSNGFSSGFGSSFSQDNSFSPLLRDAEDGYSFSNGTKDDIHGLSGLHNLGNTCFMNSAI
QSLVHTPPLVEYFLQDYSREINTENPLGLQLVA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017