Detail information of Os01g0934200_circ_g.5


General Information
CircRNA Name Os01g0934200_circ_g.5
ID in PlantcircBase osa_circ_005694
Alias NA
Organism Oryza sativa
Position chr1: 40980432-40980594  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0934200
Parent gene annotation Mitochondrial carrier protein domain containing protein. (Os01t0
934200-01)
Parent gene strand +
Alternative splicing Os01g0934200_circ_g.2 Os01g0934200_circ_g.3 Os01g0934200_circ_g.4 Os01g0934200_circ_g.6 Os01g0934200_circ_g.7
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTAATTTTTAGTGTGTACAAAAGTTATGAGGTTTGCCCAGAACTTTGAGCTTTGTATTGTC
TCTATAGTCCTTACCTGgtacattttctctttatggtatctgttccaacttggtccattgttct
agactgaagtatgaattacagtggtcactcctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACATTTTCTCTTTATGGTATCTGTTCCAACTTGGTCCATTGTTCTAGACTGAAGTATGAATT
ACAGTGGTCACTCCTCAAACCTTAATTTTTAGTGTGTACAAAAGTTATGAGGTTTGCCCAGAAC
TTTGAGCTTTGTATTGTCTCTATAGTCCTTACCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.116563906
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017